Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01428 ATGCCAGCATCTCCTTCCTTCCCATCTGGATCTCGCGGAAAATGGAAGAAGAAGAAGAGGGACACGCAAATTGGCCGTAGAAACAACTATGGGAATAGTAATAACAACGGCAGCAACAAGCATGATGATGATGATGAAGATGAAGATCTTGCCACTGTTGAAAATCAGGAAATGGAACGCGATAACGACGATTCTGAGGACCCTCAGCCGACGCCCAATTTGAGTCTTCAAGAGACTGAGCTCTTGTCGGATGATAAAATGCGAGTCTCTGAGTTTCCTCAGGTGGTCAAGCGGGCTGTCACTCGGCCTCACTCTTCTGTGTTGGCTGTTGTGGCAATGGAGAGGGCAAATCAAAGTAAGGTGCTGTCTGGGAATCCCTTGATTTTGGAGAATGTGTCTTACGGGCAGCTGCAGGCGCTGTCTGCTATGCCTGCGGATAGTCCGGCTTTGCTGGATCAAGAGAGGGTGGAGGCTGGGAATGCGGCGTATGTGATAACTCCACCATCGATTATGGAAGGTTGTGGCGTGGTCAAGAGGTTTGGGAGTAGAGTTCATGTTGTTCCTATGCACTCAGATTGGTTTTCACCTGCCACAGTGCATCGACTCGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCTGACCGCACTCCTGAGAAGTATATGGAAATCCGAAACTTCGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGATTGGTTAATTGTGTCAGTAATGACGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCCCCGACACCTAGTTGTGAACCATGGAATAGAAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTAATCAAATTTGACAAACCAAAATGTAGGCTCAAGGCAGTCGATATCTATTCGGCACGTTCATGCCATGATGACAATGATGATTTATGTGATTTGGATAACAGAATTCGGGAGCGTCTAGCTGAAAATCATTGTAGCTCGTGTTCTCGAACAGTTCCCATTGTATGCTACCAATCACAGAAGGAGGTAGATGTTTTACTTTGCACCGACTGCTTCCATGAAGGAAAATATGTTGCTGGTCATTCGAGCATCGATTTTCTGAGGGTGGACATGACGAAAGAGTATGGTGAACTAGATAGCGAAAATTGGACCGATCAAGAAACTCTATTGCTTTTAGAGGCGATAGAATTGTATAATGAGAATTGGAATGAAATAACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTCCGTCTATCGGTTGAAGATGGTATTCTAGAAAATGTTGATGTGCCTGGCGTTCCTCTCTCATCCAATTCTTCACATGGAAAAGATAACGAGAAGTCACATTCAAATATGAATGGAAATGTAGCAGGATCTTCCTCTCAAGACAATAAAGAGATGCATGATAGACTCCCATTTGCTAATTCTGGGAACCCAGTCATGGCGTTGTTTGAAGTGTATTCACCTGATCTCAATGAACGATACACTGGGAGCTCTGATTATGAGGTTGCTTTTCTTGCATCTGCTATTGGACCAAGAGTTGCTGCATCATGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGCAGCTTCTTCTGGGAGCATATTTCAAGTGGAAGGTTCTGTGAATCCTAGTAGGACGAATGTGGAGGTCACACATGGCAGAGACGGTGGCTCCTATGGAAAGCTTCCAAATTCAGTCAAGCTAAAAGATGAGAATAAGGCAGAGACAGAGGTAACACTATTATCTGCTGAAAGAGTTAAAGTTGCAGCAAAAGTAGGTCTTGCTGCCGCTGCAACAAAGGCTAAATTGTTCGCAGACCACGAAGAACGAGAAATCCAACGGTTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTTGAGTTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTCGAGAGGACAGGGCAGAGATTTGTTGCAGAACGAGCTCGAATGTTAGGTGTCCAATTTGGAGCTGCTGGAGTCAGCTCACCTGCGAGTTTACCGGGGGTTATTCCTCCCGTGGTAAACAACAATAGGGTGAGCTCACCTGCGAGTAGGCCGAATGTGATCTCGCCTCCACCATCCCAGCCGAGCGTTTCGGGGTATGGCAACAACCAACCACTTCATCCCCACATGTCGTACGTGCCCAGGCAGTCGATGTTTGGCTTGGGGCAAAGGGTACCTCTGTCAGCAATTCAGCAGCAACAGCAGCAGCTGGCCTCAACGACTTCGTCTAATGCTATGTTCAATGGCCCGAGCAATGCACAGGCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGA 2478 45.4 MPASPSFPSGSRGKWKKKKRDTQIGRRNNYGNSNNNGSNKHDDDDEDEDLATVENQEMERDNDDSEDPQPTPNLSLQETELLSDDKMRVSEFPQVVKRAVTRPHSSVLAVVAMERANQSKVLSGNPLILENVSYGQLQALSAMPADSPALLDQERVEAGNAAYVITPPSIMEGCGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVNCVSNDDLTRIVRFLDHWGIINYCAPTPSCEPWNRSSYLREDMNGEIHVPSAALKPIDSLIKFDKPKCRLKAVDIYSARSCHDDNDDLCDLDNRIRERLAENHCSSCSRTVPIVCYQSQKEVDVLLCTDCFHEGKYVAGHSSIDFLRVDMTKEYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGILENVDVPGVPLSSNSSHGKDNEKSHSNMNGNVAGSSSQDNKEMHDRLPFANSGNPVMALFEVYSPDLNERYTGSSDYEVAFLASAIGPRVAASCAHASLAALSEDSAASSGSIFQVEGSVNPSRTNVEVTHGRDGGSYGKLPNSVKLKDENKAETEVTLLSAERVKVAAKVGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTGQRFVAERARMLGVQFGAAGVSSPASLPGVIPPVVNNNRVSSPASRPNVISPPPSQPSVSGYGNNQPLHPHMSYVPRQSMFGLGQRVPLSAIQQQQQQLASTTSSNAMFNGPSNAQASLSHPMMRPVTGSSSGLG 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11173786 11181527 - CmoCh01G014280.1 Cmo01g01428 374911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01428 825 MobiDBLite consensus disorder prediction 728 764 - -
Cmo01g01428 825 Coils Coil 644 664 - -
Cmo01g01428 825 PANTHER SWI/SNF COMPLEX-RELATED 69 824 - -
Cmo01g01428 825 MobiDBLite consensus disorder prediction 42 64 - -
Cmo01g01428 825 ProSiteProfiles SANT domain profile. 408 459 IPR017884 -
Cmo01g01428 825 MobiDBLite consensus disorder prediction 1 74 - -
Cmo01g01428 825 CDD SANT 412 454 IPR001005 -
Cmo01g01428 825 SUPERFAMILY Homeodomain-like 410 460 IPR009057 -
Cmo01g01428 825 SUPERFAMILY Homeodomain-like 184 282 IPR009057 -
Cmo01g01428 825 Pfam SWIRM domain 188 274 IPR007526 GO:0005515
Cmo01g01428 825 Gene3D - 191 278 IPR036388 -
Cmo01g01428 825 SMART sant 409 457 IPR001005 -
Cmo01g01428 825 ProSiteProfiles Myb-like domain profile. 405 455 IPR001005 -
Cmo01g01428 825 Pfam Myb-like DNA-binding domain 411 453 IPR001005 -
Cmo01g01428 825 MobiDBLite consensus disorder prediction 782 825 - -
Cmo01g01428 825 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 69 824 - -
Cmo01g01428 825 MobiDBLite consensus disorder prediction 471 509 - -
Cmo01g01428 825 ProSiteProfiles SWIRM domain profile. 185 283 IPR007526 GO:0005515
Cmo01g01428 825 Gene3D - 409 459 - -
Cmo01g01428 825 Pfam SWIRM-associated region 1 631 701 IPR032451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01428 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1306.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01428 Cmo09g00769 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01428 Cmo-Chr1:11173786 Cmo19g00671 Cmo-Chr19:7166027 1.48E-12 dispersed
Cmo04g02708 Cmo-Chr4:19676406 Cmo01g01428 Cmo-Chr1:11173786 1.52E-06 dispersed
Cmo11g01130 Cmo-Chr11:6371680 Cmo01g01428 Cmo-Chr1:11173786 8.75E-07 dispersed
Cmo18g00888 Cmo-Chr18:10139197 Cmo01g01428 Cmo-Chr1:11173786 4.07E-06 dispersed
Cmo01g01428 Cmo-Chr1:11173786 Cmo09g00769 Cmo-Chr9:3895041 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01428 Cmo_Chr01 FPKM 0.672549 0.585665 0.0 0.0 0.800296 1.09662 1.455292 0.155212 0.243069 0.0