Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01441 | ATGGTGAAGAAATCGGAGAAGACGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGTCGTGTAAAAAGAAGTATAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCGCTTTTATGTCTCAAAGGTGCTTCTGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTCCGATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCTGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCCGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACTCCCCCATCCCCCGCCGTCTCGTCCCCGTCTCTCTCCTCCGATCTTCCGGACGATGAAGCGTCGGTGACCGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACCTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACGGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAAGCGACATCAGATTGTGGAGCTTCTGCTGA | 681 | 53.74 | MVKKSEKTAAESFPVAAPSCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGASASLNFPEIANSIPISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTPPSPAVSSPSLSSDLPDDEASVTVSSDGVYDQIDPSTAEMDSWCNYLDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEESDIRLWSFC | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11246008 | 11246688 | - | CmoCh01G014410.1 | Cmo01g01441 | 374924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01441 | 226 | SUPERFAMILY | DNA-binding domain | 23 | 80 | IPR016177 | GO:0003677 | |
Cmo01g01441 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 226 | - | - | |
Cmo01g01441 | 226 | Pfam | AP2 domain | 23 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | CDD | AP2 | 22 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | Gene3D | AP2/ERF domain | 22 | 82 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 23 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | SMART | rav1_2 | 23 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | PRINTS | Ethylene responsive element binding protein signature | 24 | 35 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | PRINTS | Ethylene responsive element binding protein signature | 46 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01441 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 | 14 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01441 | Cmo-Chr1:11246008 | Cmo04g02461 | Cmo-Chr4:18198808 | 2.36E-43 | dispersed | |
Cmo01g01441 | Cmo-Chr1:11246008 | Cmo09g00795 | Cmo-Chr9:4073751 | 1.34E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9114 | PF00847 | AP2 | 6.20E-12 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01441 | - | - | csv:101215527 | 291.967 |