Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01441 ATGGTGAAGAAATCGGAGAAGACGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGTCGTGTAAAAAGAAGTATAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCGCTTTTATGTCTCAAAGGTGCTTCTGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTCCGATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCTGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCCGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACTCCCCCATCCCCCGCCGTCTCGTCCCCGTCTCTCTCCTCCGATCTTCCGGACGATGAAGCGTCGGTGACCGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACCTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACGGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAAGCGACATCAGATTGTGGAGCTTCTGCTGA 681 53.74 MVKKSEKTAAESFPVAAPSCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGASASLNFPEIANSIPISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTPPSPAVSSPSLSSDLPDDEASVTVSSDGVYDQIDPSTAEMDSWCNYLDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEESDIRLWSFC 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11246008 11246688 - CmoCh01G014410.1 Cmo01g01441 374924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01441 226 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Cmo01g01441 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 226 - -
Cmo01g01441 226 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Cmo01g01441 226 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Cmo01g01441 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 14 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01441 Cmo-Chr1:11246008 Cmo04g02461 Cmo-Chr4:18198808 2.36E-43 dispersed
Cmo01g01441 Cmo-Chr1:11246008 Cmo09g00795 Cmo-Chr9:4073751 1.34E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9114 PF00847 AP2 6.20E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01441 - - csv:101215527 291.967