Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01443 ATGGTACCTCAAATTTGTGCAATGCTTCATAAAATTAAGCATTATTTGGCTATGATTTCCTTGCAATTCGGGTATGCCGGGATGTACGTCATCACCATGCTCTGCCTTAAAAAGGGCATGAACCATTACGTTCTCGCCGTGTATCGACACCTTGTTGCCACCATCGTCATTTCCCCCTTCGCTTTCGTTCTCGAGAGGCCTGTGTTGGATCAAAATCTTTACTACGTGGGGTTAAAACTTACCTCAGCAACATTCACTTCTGCTACGGTTAATATTCTCCCCGCTGTAACCTTCATTATGGCTCTCGTTTTCAGGCTGGAAACAGTGAATTTCAAGAAAATTCGCAGCATCGCAAAGGTGGCCGGAACAATGGTGACGATCGGCGGAGCCATGGTGATGACTCTATACAAAGGACCGGTGGTCGAGATCTTCCACGCCCATGGCCACCACGCCGCCCAACAAACCAGCAGCGAGTCCGCCGACCAACACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACCTTGAAGAAGTACCCGGCCGAGCTGTCGCTTACCGCCTTGATATGCATCTCCGGCACGGTGGAGGGCTCCATTGTCACGCTCATTATGGAGCGTGATTTTAGCGTGTGGGTCATCGGCTGGGACTCCCGTCTTCTTGCCGCAGTTTATACGGTAAGCACAAGTAAGCCAGCAAATTCACCTTGGAAGCATAATCGGAGCCTTTTTCATAGTGATGGGGCTTTACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTCAACAAATTAACCAGTCAAAAGGGCGGCGCCGCCACGGAGTTGCCACTCACCGCCGAGCCGGAAACCGCCGAGGCCGCCACCAACGAGCGTTTCTCTTCCAAAGCTCCACCGGCGTGATGGTTGATCTTGTTGTATCTCAAGATTACGTAGCGTTACCGAGTATGCTTCAGCTCACTCTCAGAGATTCTCAAGTTCTCTCAAAACCCTAG 1029 51.51 MVPQICAMLHKIKHYLAMISLQFGYAGMYVITMLCLKKGMNHYVLAVYRHLVATIVISPFAFVLERPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALVFRLETVNFKKIRSIAKVAGTMVTIGGAMVMTLYKGPVVEIFHAHGHHAAQQTSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICISGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTVSTSKPANSPWKHNRSLFHSDGALLSGVGQSQGPSQQINQSKGRRRHGVATHRRAGNRRGRHQRAFLFQSSTGVMVDLVVSQDYVALPSMLQLTLRDSQVLSKP 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11262018 11266050 + CmoCh01G014430.1 Cmo01g01443 374926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01443 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 136 - -
Cmo01g01443 342 MobiDBLite consensus disorder prediction 266 300 - -
Cmo01g01443 342 PANTHER WAT1-RELATED PROTEIN 67 238 - -
Cmo01g01443 342 MobiDBLite consensus disorder prediction 283 299 - -
Cmo01g01443 342 MobiDBLite consensus disorder prediction 266 282 - -
Cmo01g01443 342 PANTHER WAT1-RELATED PROTEIN 67 238 IPR030184 GO:0016021|GO:0022857
Cmo01g01443 342 PANTHER WAT1-RELATED PROTEIN 9 66 IPR030184 GO:0016021|GO:0022857
Cmo01g01443 342 PANTHER WAT1-RELATED PROTEIN 9 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01443 Cmo-Chr1:11262018 Cmo04g02464 Cmo-Chr4:18217217 5.40E-80 dispersed
Cmo10g00283 Cmo-Chr10:1264072 Cmo01g01443 Cmo-Chr1:11262018 1.62E-99 transposed
Cmo01g01443 Cmo-Chr1:11262018 Cmo09g00792 Cmo-Chr9:4054770 3.84E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01443 - - csv:101216002 407.912