Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01451 ATGGATGAGTCTTCGCTGCAACTTATCCACGACGTCGGAACTAAATTGAGCAAACAGTCTCGTCCAACCAAGGATTACATCGTGAAATCCCTCCGGCAAGTTGTAGATGCTTTTGCTTGTTTGGAACAGTCTTACGTCCCAGATGCTACAAGGGAGTCAGAACCAGCTAAAAAATTAGAGAGTTCTATAAAGCCTCTAATGAAATCTATAGTTAATGGTCTTCTACGGAATAGAGATAAAGATGTGAGACTTCTATTAGCTATATGCGTTAGTGAAATGTTCCGGGTCACGGCTCCAGAACCACCTTTCGAAGACGAATATCTAAGGGATGTTTTTATACTTCTTTTGAGCTCTTTTTCGGAGCTAGGTGATACAACAAGTCCACTTTTCCCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACATTGGATGCAACGACTTGGTGTTGGAGATGTTTGATACATTTTTCTCTGCTTTAAGAGACTATCACGAACCTAGTTTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGCGAGGATGCCTCTCTACCGCTAGTAGATGTGGTTTTGCACAATGTTGTGAAGGAGGAAAAGGGTGAACCTACAGCTGCTTCTCGCCTTGCAGTTTCGGTCATTGAAGCCAGTGCCGAGACGCTTGAACCATTTGTTTGTGGATTCTTAACATCTTGTATTTCAGAGAGAGATGTGGCGGGAAGTGAACTCAAAGAATTTTACCATGAACTAATTTTTAGAATTTTCCAATGTGTCCCTCAGATGCTTCTTCCTGTGATTCCAAACTTGACTCTAGAGCTTTTGACGGACCAAGTTGATGTTAGAATAAAAGCGGTTAAAATCGTTGGTAGGCTTTTAGCTCTACCAAAACACTCTGTACCACAAAAGTACCGAGGACTTTTTATGGAGTTCTTGAAAAGGTTTAGTGACAAATCTGCAGAAGTTAGAATTCATGCTATCCAATGTGCTAAAGATTGTTATCTGGCCAATCCTGGTAGTTCAGAATCTCTTGAAGTTCTGGCTGCAGTCGAAGAACGATTACTACACTTCGATGATAGAATGAGAACCCGAGCAATAATTATTGTTTGTGATATTGCCCGTTCAAATATCAAATTTGCCCCCGTGACACTAATATCTCAAGCTGCTGAAAGACTACGAGATAAGAGGATATCAGTTAGGAAAAAGGCCCTTCAGAAATTGTTGGAAGTGTATCGAGACTATTGTGATAAATGTTCCAAAGGTCAATTGACTATGAACGATGACTTTGAACAGATTCCTTGTAAAGTCTTGATGCTTTGCTATGATAAAGATTGTAAGGAGTTCAGGTCCCAGTGCATGGAACTTGTTCTCGTGGAAGATTTATTTCCAGCTCATCTCTCTCTTGAGGAAAGGACAAGCCACTGGATCCATTTGTTCTCTCTTTTCAATATCCATCATGAAAAGGCCCTCAGATATATTTTGCTGCAAAAACAGAGGTTCCAAGATGAGTTGCGTACTTATTTGAGTCTACGAAAAAAGGGCAAGGAGAACCAATCAGAAGAGGTAGAAAAGCGAATTGAAACTGCATTTCTCAAAATGGCAGCCTGCTTTCCAGATCCTACAAAAGCGAAGGAGTCCTTTCATAAATTAAATCAAATTAAAGCTGATAATATTTTTATCCCGTTGGAGCTTTTACTTGATGAATTGACAAGTGTGGAAGCTGAGGCCACCAGAGACAAATTGTTGAGGATGATAGGAAACTGCATTCTGAGTAACAGACTTGCAAATAAACATTTGGAGGCTTCTGCTGGCAAGCTTCTACTGGCTATTATCGGCATTTTCCCTTCACTCATCAGAGGCTTGGAAGGTCAACTGCTAAGGTTGTTGGAAGAAAGCAACCCAATAGATAGTAAGCTGATCGAAGTATTCTCAAAAGCAGGCCCTCACTTATCAATTGAACTCAGTGATGTATACCCATTTCTGGAGAGATTATGCTTGGAGGGTACTCGTGCTCAATCAAAGAGTGCTGTTTCTGCCATTGCAGCTTTAGCTGGTACTTCTGGGAATTTTTTGTTCTCTAAATTATGTAAGGAACTTGTTGATTCTCTACACAGGGGAATGAATCTCCCCACAATATTGCAATCTTTAGGTTGTATTGCAGAATATTCTGTTTCAACCTTTGATGATCATGATCTAGGGATCACACCTTATATATATGAAAAAATCCTCCAAGTGGACCTATCAGATAATTTCAATACATTAGACGGGGATAGCAATTCTTGCGATTTAAAGATTTATGGGCTGAAAACAATCGTTAAGAGTTTTTTGCCACATCAAGGAACTCCTAGAAGAAATGTTGATGAGTTTCTGAAAATTTTATTAGGGATGCTGAACGCGTGTGAACCTTCTGTTGGGAACATCCCTACTGATAGTGATCAAGCTCGAATCAGATTAGCTGCTGCAAAATCAGTTCTTCGTCTTGCCAAAAGATGGGATTCACAAATTACACCGGAGATTTTCCGTTTTGCAATCTTGATGGCAAAGGACTCCTCTTCTTTGGTTAGAAGGCTATTTATTGACAAAGCACGCAAGTTACTAAAGGAGCAGGCTATACCTACTCGATATGCTTGTGTTTTTGCATTTTGGATCTCAGATAGCTTGAAGGATCTTCAGGATGATTCACTCAAATATATGGCAGAATTTATTGAGCAATATAGGAAGATAGCTCAGATTCATCAAAATTCTGTGGGTCAAGGTGGATCAGTGACCTTTGTTCCAGCGTATATAGTAGTATTCTTGATATATATTCTAGCTCATGATTCAGGCTTCCCGCATACAGTCTGTCAAGATGAAAATGAATATGCTCAATTTTGTAGCCCCCTCCTATTTACGTTGCAGATGTTAGTCAATGCAGATGTAAATGTTGCAAAGGATACCGTTCTGTATTTGCACAGTATTTTTCGTGCCATTAAGAGGGTTGAGGATGCTGTGGATGTTGAAACATCACCTAAGTTACACATTTTAGCGGACATTGGTCTCTCTTTTGTAACTGCTCCAAATTATTCCGGAGTCTCCCTATCATGTGCCCCAAGGCAGATTTTGCTGCCATTATCACTATATAGAGTAAATTCCAGGCAGCTTTCTCAACATGCTTTGGATGAATGTTTTATTGGAAGAGTTATTAAGACATTTCAATCTCAGTTCATTTTGCCCACTATCAACCCATGTTCCTCAATAAGCATGAAAGCTTGTAAGCAAGTTGAAGCCATTTCCTCTAGAGCAACGAAGATCAATAAAACTGTGAATCAGGAGGCTATCGTTGGACGGAGGCGAAAACGGGCTGTCTCTCCAACAATGTCCTCATCAATTGAGTTGCGGGAGAGTTGTTGGAAGTATCAAATACGAGCATTTGCTGTCTTGAGGACCAGCAGAAGGTTGCCACTTCTGAGCTTCTCAACTCCCTCAAGACTTCTGCAACTCCGACCATTCCAAGTCCCATCACCGCCTTTTGCCTCACAGCTCCATTCTAGGTTTTCAGGCGGAGCCGAGCTCTCGTTAACTGTGTTCAGACGGTTCGCGCCTTCTTATCATGTGCGCTTGCCCATGGCTAACTTGAGGACCGACTCTCCCGTCGCTTGTCGCATCGTTCGTGCCTTTCTTGACTTTCTTAACTCTGTGGAGCCAGGTCCAGGTGTTGATGTTGAGGGCATTGAGGTAGCAAAACAATGTTTAGAACAAGTGTTTAAAGTTCAGTCTCCTGCTGCCGGCGAGTTAGCGGAATTCAATTCGCTAGTAGGCATTTTTAGTTCAACGGAATCTTTTCAGCGTTCTGGAACTAATTCATCTGTTGATAATGGAGCCGTTCCGATGGAACATTGCAGTTCTCTCAATGTGAATGATTCTGGCGCCAATTTGTCAAAGTCATCAAGACCTCAGGGGGATGATTGTTCAAGAGAATCTCATCCCTTAGGAGTATTGCAAGATGAACTTTTTGGGCAATTTGTTCTTGCACTTGAAAAACTTCGATATTTTAGGACCTCAGCAGATGGGAGGGATGATCCTGACCAACTCGAGCGAGCAACTCGTTTGTTTCATGATGCTCTTGGAGAAATGGAAAGATCTGGATGCACCGAAATTAATCACAAAAACCTGGCTGAGTCCTTGAAGTCCCTTGGTAACAGGGCTATGCAGTCAAAACTATACTCCGACGCAATTGAGTTGTATAGCTGTGCAATTGCACTATGTGAAAATAATGCCATTTACTACTGTAACAGGGCAGCTGCTTACACTCAAATCCAAAAATACTCTGAAGCAACAAGAGACTCTTTGAAATCCATTGAAATTGACCCAAATTATAGCAAGGCATATAGTCGTCTGGGCTTGGCTTTATATGACCAGGGGAGCTATCGTGATGCTATTGATAAAGGATTTATGAAAGCCTTGCAGTTGGATCCAAACAATGAAGCTGTCAGGGAAAATATTCGAGTAGCTGAACAGAAGTTAAAGGAAGCACAGCGACAAACTCACCATGAGCAGGGTTCATCCAGTCGAAGTCAAGAATCCCAATACCAGCAGTCTAGTGGAGCGTCAAGGAATGACAGCCCATCACCTCCCTTCCCTTCTATGCCCTTTAATGGCACTTTACCTTCCGAAATCTCAAACATATTCATGAACATGGCTGCTAACCATGGGCAACATACCGGAGTCGGGGGAGAAGAGAACAGAAGCGGAAATGGATCAGCAGATGATCCAAGAACAAATATGGATGCAAATTTCAGTTTCAGCGTTGGAGATGGAATGCCACAGGATCTCAATGGTGCTTTGAGATCTATGATGCAGATGTTCACCGGAGCAGCCTCCGGTGCAAATCCTCAGGATAACATCAATAGAAGACCCCCACAAGGCTGA 4935 41.68 MDESSLQLIHDVGTKLSKQSRPTKDYIVKSLRQVVDAFACLEQSYVPDATRESEPAKKLESSIKPLMKSIVNGLLRNRDKDVRLLLAICVSEMFRVTAPEPPFEDEYLRDVFILLLSSFSELGDTTSPLFPRRVKILETVARCKCCVIMLDIGCNDLVLEMFDTFFSALRDYHEPSLVNNILSIMTHILSEDASLPLVDVVLHNVVKEEKGEPTAASRLAVSVIEASAETLEPFVCGFLTSCISERDVAGSELKEFYHELIFRIFQCVPQMLLPVIPNLTLELLTDQVDVRIKAVKIVGRLLALPKHSVPQKYRGLFMEFLKRFSDKSAEVRIHAIQCAKDCYLANPGSSESLEVLAAVEERLLHFDDRMRTRAIIIVCDIARSNIKFAPVTLISQAAERLRDKRISVRKKALQKLLEVYRDYCDKCSKGQLTMNDDFEQIPCKVLMLCYDKDCKEFRSQCMELVLVEDLFPAHLSLEERTSHWIHLFSLFNIHHEKALRYILLQKQRFQDELRTYLSLRKKGKENQSEEVEKRIETAFLKMAACFPDPTKAKESFHKLNQIKADNIFIPLELLLDELTSVEAEATRDKLLRMIGNCILSNRLANKHLEASAGKLLLAIIGIFPSLIRGLEGQLLRLLEESNPIDSKLIEVFSKAGPHLSIELSDVYPFLERLCLEGTRAQSKSAVSAIAALAGTSGNFLFSKLCKELVDSLHRGMNLPTILQSLGCIAEYSVSTFDDHDLGITPYIYEKILQVDLSDNFNTLDGDSNSCDLKIYGLKTIVKSFLPHQGTPRRNVDEFLKILLGMLNACEPSVGNIPTDSDQARIRLAAAKSVLRLAKRWDSQITPEIFRFAILMAKDSSSLVRRLFIDKARKLLKEQAIPTRYACVFAFWISDSLKDLQDDSLKYMAEFIEQYRKIAQIHQNSVGQGGSVTFVPAYIVVFLIYILAHDSGFPHTVCQDENEYAQFCSPLLFTLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDVETSPKLHILADIGLSFVTAPNYSGVSLSCAPRQILLPLSLYRVNSRQLSQHALDECFIGRVIKTFQSQFILPTINPCSSISMKACKQVEAISSRATKINKTVNQEAIVGRRRKRAVSPTMSSSIELRESCWKYQIRAFAVLRTSRRLPLLSFSTPSRLLQLRPFQVPSPPFASQLHSRFSGGAELSLTVFRRFAPSYHVRLPMANLRTDSPVACRIVRAFLDFLNSVEPGPGVDVEGIEVAKQCLEQVFKVQSPAAGELAEFNSLVGIFSSTESFQRSGTNSSVDNGAVPMEHCSSLNVNDSGANLSKSSRPQGDDCSRESHPLGVLQDELFGQFVLALEKLRYFRTSADGRDDPDQLERATRLFHDALGEMERSGCTEINHKNLAESLKSLGNRAMQSKLYSDAIELYSCAIALCENNAIYYCNRAAAYTQIQKYSEATRDSLKSIEIDPNYSKAYSRLGLALYDQGSYRDAIDKGFMKALQLDPNNEAVRENIRVAEQKLKEAQRQTHHEQGSSSRSQESQYQQSSGASRNDSPSPPFPSMPFNGTLPSEISNIFMNMAANHGQHTGVGGEENRSGNGSADDPRTNMDANFSFSVGDGMPQDLNGALRSMMQMFTGAASGANPQDNINRRPPQG 1644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11303043 11324243 - CmoCh01G014510.1 Cmo01g01451 374934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01451 1644 Gene3D - 5 340 IPR011989 -
Cmo01g01451 1644 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 3 1148 IPR039776 GO:0007064
Cmo01g01451 1644 Gene3D - 421 879 IPR011989 -
Cmo01g01451 1644 SMART tpr_5 1394 1427 IPR019734 GO:0005515
Cmo01g01451 1644 SMART tpr_5 1462 1496 IPR019734 GO:0005515
Cmo01g01451 1644 SMART tpr_5 1428 1461 IPR019734 GO:0005515
Cmo01g01451 1644 MobiDBLite consensus disorder prediction 1520 1544 - -
Cmo01g01451 1644 MobiDBLite consensus disorder prediction 1511 1559 - -
Cmo01g01451 1644 Coils Coil 1496 1516 - -
Cmo01g01451 1644 Pfam Sister chromatid cohesion protein PDS5 protein 600 1050 - -
Cmo01g01451 1644 Pfam Sister chromatid cohesion protein PDS5 protein 26 596 - -
Cmo01g01451 1644 Gene3D Immunoglobulin FC, subunit C 1215 1282 - -
Cmo01g01451 1644 MobiDBLite consensus disorder prediction 1308 1328 - -
Cmo01g01451 1644 Gene3D Tetratricopeptide repeat domain 1386 1544 IPR011990 GO:0005515
Cmo01g01451 1644 ProSiteProfiles TPR repeat profile. 1428 1461 IPR019734 GO:0005515
Cmo01g01451 1644 MobiDBLite consensus disorder prediction 1572 1607 - -
Cmo01g01451 1644 SUPERFAMILY ARM repeat 58 922 IPR016024 -
Cmo01g01451 1644 SUPERFAMILY TPR-like 1393 1507 IPR011990 GO:0005515
Cmo01g01451 1644 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 3 1148 - -
Cmo01g01451 1644 MobiDBLite consensus disorder prediction 1578 1602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01451 K11267 PDS5; sister chromatid cohesion protein PDS5 - csv:101216961 1728.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01451 Cmo-Chr1:11303043 Cmo13g00331 Cmo-Chr13:4247178 0 dispersed
Cmo02g01709 Cmo-Chr2:9800904 Cmo01g01451 Cmo-Chr1:11303043 1.45E-10 dispersed
Cmo16g01100 Cmo-Chr16:7756958 Cmo01g01451 Cmo-Chr1:11303043 1.35E-10 dispersed
Cmo09g00785 Cmo-Chr9:4007768 Cmo01g01451 Cmo-Chr1:11303043 0 transposed
Cmo01g01451 Cmo-Chr1:11303043 Cmo09g00784 Cmo-Chr9:3987691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01451 Cmo_Chr01 FPKM 0.899851 0.0 0.823676 1.046264 2.121254 1.453067 1.607628 0.747172 1.154919 0.820065