Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01466 ATGGTTCGTGTCAAGAATATTGAAAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTGAACGAGTGCAAGTGGTCATTCAAGGAGGGTGATGTGGCAGTTCTTTCATGCCCCAGACCTGGATCAGTCCGATCAAAGAGGAACAATACTATGTCTGTTGAGGATGAGGAAGACCCTGAATCTGGTGGACGTGTGGCTGGAACTGTTCGGCGACACGTTCCCCTTGACACTCGTGACCCGCCAGGCGCCATCCTGCACTTTTATGTTGGGGACTCATACGATCCTAGTAGGATTGAAGAAGATCATATAGTTAGAAAACTTCAGGCAAAGAATGTTTGGTTTTTAACGGTGCTTGGTTCTCTTGCAACAACCCAGCGAGAGTATGTTGCCCTACATGCATTTCGTCGGCTCAACATGCAGATGCAATCTTCAATCCTTCAGCCTAGTCCTGAACAATTTCCGAAGTATGAGCAGCAGTCACCTGCTATGCCCGAGTGCTTCACACAAAATTTTGTTGAGTATTTGCATAGGACCTTCAACGGACCTCAGCTATCTGCAATCCAATGGGCAGCAACACATACAGCTGCTGGTACAAGCAGCGGGACAGTTAAGAGGCAAGAACCATGGCCTTTTACACTCGTGCAAGGTCCTCCTGGAACAGGTAAGACACATACAGTTTGGGGAATGCTAAATGTTATCCATCTGGTTCAGTACCAGCATTACTATACTTCCTTGCTTAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATGTCTCTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAGAATCTTTTCCGCACTCTTCCCACACTGTGTCCTAAACCTAGAATGTTAGTCTGTGCACCTTCAAATGCTGCAACAGATGAGCTTCTTGCACGTGTTCTTGATCGAGGGTTTATTGATGGGGAAATGAAGGTTTATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACACGTGCAGCCCAAGCAGTTTCAGTTGAGCGTAGAACAGAACAACTTTTGGTCAAAAGTAGAGACGAAGTCTTAAGATGGATGCACCAGCTAAAAGTTCGCGAAACTCAATTATCTCAGCAAATCAGTAGTCTTCAGAGAGAACTCAATGTTGCTGCTGCTGCTGTTCGCTCTCAAGGATCTGTTGGTGTGGACCCTGATGTTCTGGTGGCTCGTGACCAAAATCGAGATGCATTGTTGCAAAACCTTGCTGCTGTAATAGAAGGTAGGGATAAAATTTTAGTTGAGATGTCACGCCTACTTATTTTAGAAGGCAGGTATCGATCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAACGAGGCCGAGATAGTTTTCACCACAGTGTCAAGCAGTGGTCGCAAATTGTTTTCTCGACTATCTCATGGTTTTGACATGGTGGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTAGCTGTTCTTCCGCCGCTTTCTCTTGGGGCAGCAAGGTGTGTGCTTGTTGGAGATCCCCAGCAGCTCCCAGCCACTGTTATCAGTAAAGCAGCTGGAACATTGTTGTACAGTAGAAGTCTCTTTGAAAGATTCCAGCAAGCAGGATGTCCCACTATGTTGTTATCGGTGCAGTATAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGGCGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCTGATGAGACATACTACAAAGACCCTATACTTAGACCTTACACTTTCTTTGATATTACGCATGGGCGGGAATCTCATAGAGGGGGATCTGTTTCATATCAAAATATTCATGAAGCACAATTTTGTCTTCGTTTGTATGAACATCTACAGAAAACCGTGAAGTCATTAGTCTTGGGTAAAGTTTCAGTTGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGGAAGGATCTATATATTAATACTGTAGATGCTTTCCAAGGTCAAGAAAGAGATGTGATTATCATGTCTTGTGTGCGTGCCTCCAGCCATGGTGTTGGTTTTGTTGCAGATATTCGTCGAATGAATGTAGCACTGACCCGAGCAAGGAGAGCTCTTTGGGTAATGGGCAATGCTAATGCTTTGATGCAGTCTGATGATTGGGCTGCGTTGATCACTGATGCGAAGTCAAGGAACTGTTACATGGATATGGAATCCCTTCCGAAGGATTTCCTCGGACAGAAGGGATCTACTCAATCTACTTTGCCTGGGAAGAACTCTTCCAACACTAGGGGCCCGAGATCAGTTCTTCCAAGACATAGGTCTCTAGATATACACGTGGAGTCAAGGTCTGGAACACCATCGGAAGATGATGAGAAATCAAACTCTTCAGTAATTACTAGGAATGGAAATTACCGGTCTTCTAAGGCTGCCGTAGAGACTTCCGCAGAAGATTTTGATCAGTCAGGTGACAAACTGAGAGACACTTGGCAATATGAGGAAACCTTTTGGTTAATATTATGTGTGCATCCGCATGAGGCTCAGCTTTTGAGGGCTATTCTGCATGCTGATCCCTGGCAGTGTCTGAGTATCATACTGAGAAAGGGATCAAATGATGGCATCTGGATGTTGGAATTACTGTCCTCAAATGGCCATGACTTGCTATTGGTCTTTGATGATCGAACCCTCGTGGAGGTGGAGATCGACTCTCTGGGGAGCTGGCCGAGGTAA 2802 45.15 MVRVKNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSCPRPGSVRSKRNNTMSVEDEEDPESGGRVAGTVRRHVPLDTRDPPGAILHFYVGDSYDPSRIEEDHIVRKLQAKNVWFLTVLGSLATTQREYVALHAFRRLNMQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHVSTGSIDEVLQNMDQNLFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEVLRWMHQLKVRETQLSQQISSLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLLILEGRYRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDETYYKDPILRPYTFFDITHGRESHRGGSVSYQNIHEAQFCLRLYEHLQKTVKSLVLGKVSVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALITDAKSRNCYMDMESLPKDFLGQKGSTQSTLPGKNSSNTRGPRSVLPRHRSLDIHVESRSGTPSEDDEKSNSSVITRNGNYRSSKAAVETSAEDFDQSGDKLRDTWQYEETFWLILCVHPHEAQLLRAILHADPWQCLSIILRKGSNDGIWMLELLSSNGHDLLLVFDDRTLVEVEIDSLGSWPR 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11406639 11411632 + CmoCh01G014660.1 Cmo01g01466 374949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01466 933 Pfam AAA domain 186 533 IPR041677 GO:0004386
Cmo01g01466 933 Pfam AAA domain 540 736 IPR041679 -
Cmo01g01466 933 PANTHER DNA2/NAM7 HELICASE FAMILY 1 837 IPR045055 -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 769 842 - -
Cmo01g01466 933 CDD SF1_C_Upf1 564 753 IPR041679 -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 51 67 - -
Cmo01g01466 933 Coils Coil 366 386 - -
Cmo01g01466 933 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 837 - -
Cmo01g01466 933 Gene3D - 103 561 IPR027417 -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 43 67 - -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 769 792 - -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 821 839 - -
Cmo01g01466 933 MobiDBLite consensus disorder prediction 794 820 - -
Cmo01g01466 933 CDD DEXXQc_SETX 181 563 - -
Cmo01g01466 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 765 IPR027417 -
Cmo01g01466 933 Gene3D - 562 767 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01466 - - K10706 cmos:111446131 1702.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01466 Cmo-Chr1:11406639 Cmo17g00606 Cmo-Chr17:6417842 1.14E-95 dispersed
Cmo01g01466 Cmo-Chr1:11406639 Cmo09g00635 Cmo-Chr9:3176566 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01466 Cmo_Chr01 FPKM 8.864898 7.582094 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0