Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01470 ATGTTTGGGTTGGCTTGTCCATTGGGCTTTTTAGACGACCTAGGTAGCTTCACAATGCTCATGGCCTTTTGTGCTTATGTCAAGGAAGTTGGTGACATGATGACAGAAGAGTCAGTGATTGAAGCTCCAGTGAACGGTGGCGGTAACTGTAACGGTCCTAAGATAGTGAAATTCCTTGTTGGTGACAGAAGAACAAGGATCTGTCAGAGACCAAACCAGAAACATTCTGGAACTTCAAGAGTGTTGAAGAAGAAGAAGAAGACAGGTGATAATTTGAGAGTTAAAATGAGGGGCGAAGAAGGGAATTCAGCTGAAGAGAATCTTGAAACAAAAGAGGGAACTCCATCTTCAGAGGATGAGAGATACATTCACAAAGTTTCAGTTCCACCAAAGCAGAAACTGTTCCAAGAAATCAAATCTGGAGTGAAAGAAACATTCTTCCCTGATGATCCTCTCCGTTCATTCAAGGATCAAACAAATCGCCGTAAATTTATCCTCGGAACCCGGGCCGTTTTCCCTATACTTGAATGGGGAAGAGATTACAATATCTCCAAGTTTAGAGGAGATGTCATTGCTGGACTCACCATTGCCAGTCTCTGCATTCCTCAGGATATTGGGTATGCAAAGCTTGCAAATTTGCCTCCAGAGTATGGATTATATTCAAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTGGCTGTTGTTTCTCTCTTGTTGGGGGCAATGCTTCAAGCCGAAATCGATTCGGCTACGAACGCAGAAGAATACAGACGGCTGATTTTTACAGCTACATTCTTTGCAGGGATCACACAAGCCACCTTAGGAGTTCTAAGGTTGGGATTCCTAATTGACTTCTTGTCCCATGCTGCTATTGTTGGCTTCATGGGGGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATAAAGAATTTCACAAAGAAAACGGATATTATCTCGGTTATGCAGTCGGTATTCGGCACGATGCAACACGGATGGAACTGGCAGACAATAGTGATTGCTGCAACCTTCTTATGCTTTCTTCTATTTGCAAAATTCACTGGGAAGAGGAACAAGAAGCTGTTCTGGGTGCCTGCTATTGCTCCACTCATATCTGTTGTTCTGTCTACCCTTTTGGTTTACCTTACTCGTGCTGATAAGCAAGGGGTTGCAATTGTGAAACACATAAAGAGAGGAATCAATCCCCCATCTGTGAAAGAATTGTATTTCTCAGGTCAATACCTTCTAAAAGGGCTTAAGATCGGTGTCGTGGCGGGTATGGTAGCATTGACGGAAGCCGTAGCGATCGGAAGAACGTTCGCTGCAATGAAAGACTATCAAATTGATGGGAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACAGGTTCATTCTCTCGATCAGCCGTAAACTACATGGCTGGCTGCCAAACTGCAGTATCCAACATTGTGATGTCCCTTGTAGTAGTCCTAACTCTGGCATTCATCACTCCACTTTTCAAATATACTCCAAATGCAATCCTATCTGCTATCATTATAAATGCTGTGATCAACCTGGTTGACTTGCATGCAGCGAAGTTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCCTCGGTGTCATCTTTTTCTCTGTAGAGATGGGGCTTCTAATTGCGGTATCCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGACCACGGACTGCACTTCTTGGAAAGATCCCAAGGACAACCGTTTATAGAAACATACATCAATATCCCGAAGCAACCAAAGTTCCTGGCGTTTTGATTGTGAGAGTTGATTCAGCCATTTACTTTTCCAACTCAAATTACATCAAGGAAAGGATATTGAGATGGCTAGTTGATGAGGAAGAATTAACAAAAGAGTCCTACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACAAGTGGCATACATGCTTTGGAAGAGCTAAATGGAAGTCTCAAGAAACGAGAAATACAGCTGATTCTAGCCAATCCAGGGCCCGTGGTGATCCACAAGCTTCACGCATCAGAGTTTGCAGATTTGATAGGACAAGACCATATCTTTCTCACAGTAGCAGATGCAGTATCATCGTGCAGTCCTAAGATAATGAACGATGTTTGA 2250 42.76 MFGLACPLGFLDDLGSFTMLMAFCAYVKEVGDMMTEESVIEAPVNGGGNCNGPKIVKFLVGDRRTRICQRPNQKHSGTSRVLKKKKKTGDNLRVKMRGEEGNSAEENLETKEGTPSSEDERYIHKVSVPPKQKLFQEIKSGVKETFFPDDPLRSFKDQTNRRKFILGTRAVFPILEWGRDYNISKFRGDVIAGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGAMLQAEIDSATNAEEYRRLIFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKNFTKKTDIISVMQSVFGTMQHGWNWQTIVIAATFLCFLLFAKFTGKRNKKLFWVPAIAPLISVVLSTLLVYLTRADKQGVAIVKHIKRGINPPSVKELYFSGQYLLKGLKIGVVAGMVALTEAVAIGRTFAAMKDYQIDGNKEMVAMGVMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSLVVVLTLAFITPLFKYTPNAILSAIIINAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEMGLLIAVSISFAKILLQVTRPRTALLGKIPRTTVYRNIHQYPEATKVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEELTKESYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVIHKLHASEFADLIGQDHIFLTVADAVSSCSPKIMNDV 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11419047 11426411 - CmoCh01G014700.1 Cmo01g01470 374953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01470 749 CDD STAS_SulP_like_sulfate_transporter 619 734 - -
Cmo01g01470 749 MobiDBLite consensus disorder prediction 77 91 - -
Cmo01g01470 749 Gene3D STAS domain 598 744 IPR036513 -
Cmo01g01470 749 TIGRFAM sulP: sulfate permease 173 737 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo01g01470 749 MobiDBLite consensus disorder prediction 71 119 - -
Cmo01g01470 749 ProSitePatterns SLC26A transporters signature. 215 236 IPR018045 GO:0008271|GO:0008272
Cmo01g01470 749 MobiDBLite consensus disorder prediction 92 119 - -
Cmo01g01470 749 PANTHER SULFATE TRANSPORTER 1.2-LIKE 116 746 - -
Cmo01g01470 749 Pfam STAS domain 619 737 IPR002645 -
Cmo01g01470 749 PANTHER SULFATE TRANSPORTER 116 746 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo01g01470 749 SUPERFAMILY SpoIIaa-like 620 742 IPR036513 -
Cmo01g01470 749 Coils Coil 654 674 - -
Cmo01g01470 749 ProSiteProfiles STAS domain profile. 618 741 IPR002645 -
Cmo01g01470 749 Pfam Sulfate permease family 186 566 IPR011547 GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01470 Cmo-Chr1:11419047 Cmo19g00288 Cmo-Chr19:2113518 0 dispersed
Cmo04g02732 Cmo-Chr4:19784684 Cmo01g01470 Cmo-Chr1:11419047 3.39E-125 transposed
Cmo01g01470 Cmo-Chr1:11419047 Cmo15g00746 Cmo-Chr15:3662569 0 wgd
Cmo01g01470 Cmo-Chr1:11419047 Cmo04g02421 Cmo-Chr4:17976223 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01470 K17470 - csv:101207370 1118.22