Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01471 ATGGAAAAAACAGCTGAGTTCTCTTTTTGTGGGTTTGTGAGATGGATTTTCCAGCGACGATGCAAGTGGTTTAAGAAATCCTCTGTTCATTCATTACCCACAAATACCTCTGAAAATTGCTCTGTTTCTGATGATGCCAAGATGCCATTGGAACAGGATCGAAGAACCCACCAAAAACCCACTTTGGATCAACCAAGACCTTCGATTTCTCACCAGAAGAATCAAAGTCGGAGGCCTTCCGATGCTGCAAGAATCTCGTTAAGTAATGGGTCAGTTTTGGGTAATTTGAAGCCAATTGGATCGGCGAACAACAGTCCAAGGAATCGACAAGAGATGAATTCAAGTCCAAAACTTGGAGGAAATGGCAATATGGGGAACATTATGAGGAGAAGTTCATGTGAATTAAAGCCGAATGTGTTGAAATCCATGGGAAATGAAGCTTACAAACAGGGGAAATACGAAGAAGCATTGGCTTTGTATAACAGAGCAATAGCATTAGATTCAGAGAATCCTGTTTATTATAGCAACAAAGGAGCTTCTTTGATTGCCTTGCATCGTTTCATGGAAGCCATTGAAGAATGCAAGAAGGCATTAAAGATTCAGCCATCATATCAAAGAGCCCATCACCGTTTAGCCACTACCTATCTCAGAATTGGGGAGCCTGAGAAAGCATTGGCTCACTTGGAACAATCAGGCCCTTACAGTGACATAAACGACATGAACAGAGCATGTGTTCTTCAGAGCTGTTTGAGTAAGTGTATTGAAGCAAGGAAGCTACAAGATTGGGACACTCTGTTAAAAGAGACCAAATGGACAATTTCCTCTGTTTCTAATTCAGCTTATAAGCTCTACGCTTTGCAAGCTGAGGCCTTGTTGAAGTTCCATAGATATCAAGAGGCTTATGCCATTTACCAAAAGGGTCAATCCCTCGAGCCAAATTTGCTAACCAAGTTATTTAGTGTAGCTGATAGTGCACTTATTTTATCCATTGAGGCACAAGTTTACACGACAATGGGCAGGTTTGAGGAAGCTGTGGCTGCAGCAGAACGATCAACAAGGCTTGATCCAACTAATATGGAGGCAAACAGAGTGGCAAAATGGGCTAAACTTGTTTCATCAGCTAGATTGAGAGGCAATCTACTCTTCAAGGAATCAAGATTTCCAGAAGCCTGTACTGCATATAGTGAAGGATTAGAACACGACCCGTATAATTCGATTTTGCTATGCAACCGAGCAGCATGTCGATCGAAGCTGGGACGGTACGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTTATGACACAGCCATGTTACAGCAAAGCCAGACACCGCAGAGCTGATTGCAATGCAAAAATGGAGAGATGGGAAGCTTCAATTCAAGATTACGAGGTGTTGATAAGAGAGAGACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTTGAGGCGCAGCTTCAACTCAGGAAGCAACATGGGGAGGACGTAAAAGACTTGAAATTTGGGTGTAATTTGGTGTGTATTTCAAGTTATGAACGTTTTAGGCACTTTGTTACCTCTCCTGGGATGTCGGTGGTTCTGTTTTGCAACAAAAGCTACCAGAAAGAGGGGCTAGAAGTGTTCGAGTCGGTTTACGAGCGGTTTCCGTGGCTAAACTTCCTAAAGGTGGAGGTAGAAGACCATCCTTATTTGGTGAAGTTGGAGGAGGTGAGGTCCATTCCAGCTTTCAAGATATACAGAAATGGGAGAATAGTGAAGGAGATTCCAGGCTCTAAACCCCATTCATTAGAGAGTTTAGTGAAGTTGTACAGCAGTTGA 1812 43.05 MEKTAEFSFCGFVRWIFQRRCKWFKKSSVHSLPTNTSENCSVSDDAKMPLEQDRRTHQKPTLDQPRPSISHQKNQSRRPSDAARISLSNGSVLGNLKPIGSANNSPRNRQEMNSSPKLGGNGNMGNIMRRSSCELKPNVLKSMGNEAYKQGKYEEALALYNRAIALDSENPVYYSNKGASLIALHRFMEAIEECKKALKIQPSYQRAHHRLATTYLRIGEPEKALAHLEQSGPYSDINDMNRACVLQSCLSKCIEARKLQDWDTLLKETKWTISSVSNSAYKLYALQAEALLKFHRYQEAYAIYQKGQSLEPNLLTKLFSVADSALILSIEAQVYTTMGRFEEAVAAAERSTRLDPTNMEANRVAKWAKLVSSARLRGNLLFKESRFPEACTAYSEGLEHDPYNSILLCNRAACRSKLGRYEKAVEDCTAALMTQPCYSKARHRRADCNAKMERWEASIQDYEVLIRERPGNEEVGRALFEAQLQLRKQHGEDVKDLKFGCNLVCISSYERFRHFVTSPGMSVVLFCNKSYQKEGLEVFESVYERFPWLNFLKVEVEDHPYLVKLEEVRSIPAFKIYRNGRIVKEIPGSKPHSLESLVKLYSS 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11426484 11428966 - CmoCh01G014710.1 Cmo01g01471 374954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01471 603 SMART tpr_5 325 358 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 137 170 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 171 204 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 371 404 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 281 314 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 205 238 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 405 438 IPR019734 GO:0005515
Cmo01g01471 603 SMART tpr_5 439 472 IPR019734 GO:0005515
Cmo01g01471 603 Gene3D Glutaredoxin 501 602 - -
Cmo01g01471 603 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 7 89 - -
Cmo01g01471 603 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 102 601 - -
Cmo01g01471 603 SUPERFAMILY Thioredoxin-like 447 595 IPR036249 -
Cmo01g01471 603 Pfam Tetratricopeptide repeat 332 405 - -
Cmo01g01471 603 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Cmo01g01471 603 Pfam Tetratricopeptide repeat 408 432 IPR019734 GO:0005515
Cmo01g01471 603 ProSiteProfiles TPR repeat region circular profile. 137 170 - -
Cmo01g01471 603 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Cmo01g01471 603 MobiDBLite consensus disorder prediction 28 43 - -
Cmo01g01471 603 MobiDBLite consensus disorder prediction 28 129 - -
Cmo01g01471 603 ProSiteProfiles TPR repeat profile. 325 358 IPR019734 GO:0005515
Cmo01g01471 603 SUPERFAMILY TPR-like 138 361 IPR011990 GO:0005515
Cmo01g01471 603 CDD TRX_family 510 599 - -
Cmo01g01471 603 MobiDBLite consensus disorder prediction 47 61 - -
Cmo01g01471 603 SUPERFAMILY TPR-like 374 489 IPR011990 GO:0005515
Cmo01g01471 603 MobiDBLite consensus disorder prediction 62 128 - -
Cmo01g01471 603 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 102 601 IPR044534 -
Cmo01g01471 603 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 89 IPR044534 -
Cmo01g01471 603 Pfam TPR repeat 144 180 - -
Cmo01g01471 603 Gene3D Tetratricopeptide repeat domain 138 491 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01471 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 903.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01471 Cmo09g00631 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01471 Cmo-Chr1:11426484 Cmo04g00863 Cmo-Chr4:4307567 8.66E-129 dispersed
Cmo01g01471 Cmo-Chr1:11426484 Cmo09g00809 Cmo-Chr9:4160541 1.68E-129 wgd
Cmo01g01471 Cmo-Chr1:11426484 Cmo09g00631 Cmo-Chr9:3163422 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01471 Cmo_Chr01 FPKM 9.212543 10.483847 7.829219 8.16203 6.054606 5.803586 7.710958 8.4445 6.522457 7.009292