Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01473 ATGAAGCCGGAGACGGTGACTCTGATTCTTGTGAACCTCGCTGGAGTGATGGAGAGGGCCGATGAATCTCTGTTACCTGGTGTCTACAAAGAGGTCGGTGCCGCCTTGCACACCGATCCGACTGGTCTCGGCTCCTTGACTCTCTTCAGATCGATTGTGCAGGCTTCTTGTTATCCCTTGGCTGCGTACTTGGCCGTGCGCCATAACCGAGCTCATGTGATTGCTCTCGGCGCTTTTCTCTGGGCTGCCGCTACGTTTCTTGTCGCATTTTCCTCTACTTTCCTTCAGGTCGCTGTTTCAAGAGCATTGAATGGGATAGGCCTTGCATTAGTTGCACCTGCCATCCAGTCCCTTGTTGCAGATTCAACAGATGACAATAACCGTGGTGTGGCTTTTGGATGGCTTCAAACAACAGGCAACCTAGGCTCCATTATTGGCGGGTTGTGTTCAATAGTATTAGCTCCAAGAACATTTATGGGAATCCCCGGTTGGAGAATTGCATTTCATATTGTTGGACTAATCAGTGTTGTTGTTGGCATACTAGTCCGTTTCTTTGCACATGATCCACATTTTTCAGACGACGGCATTAAAACTGGTAATCATGCTCCACCCAGTAATTCCTTTTGGTCTGAAGTGAAGGACTTGGTACGGGAATCCAAGTCAGTTATAAAGATTCCATCCTTCCAGATCATAGTAGCGCAGGGTATCACAGGTTCATTTCCTTGGTCAGCCTTGTCATTTGCAACAATGTGGTTGGAACTCAAGGGCTTCTCCCATGAGACGACGGCTTTTCTAATGGGCATGTTTGTGATTGGAAACTCTCTTGGAGGCTTGTTTGGAGGTAAAATGGGAGATATCCTTTCCACACGTTTCCCAAATTCTGGGAGGATTATTCTGGCACAGATTAGCTCAGCATCAGGCATTCCTCTAGCTGCAGTTCTTCTGCTCCTCTTGCCTGACGGCCCATCTACAGCAGTTGTCCATGGACTAGTCTTGATCATTGTGGGGTTTTTCATTTCTTGGAATGCACCAGCTACAAATAATCCCATTTTCGCAGAGATAGTTCCTGAGAAATCTCGAACTAGCGTCTATGCTTTAGATCGATCTTTTGAGTCTATTTTGTCATCATTTGCCCCTCCTGTTGTTGGAATTCTTGCTCAGCATGTCTATGGTTATAAGCCTGTCCAGAAGGGATCTAGTGAATCTGAAGAGATTGCCACAGATAGGGGGAATGCAGCGTCATTAGCCTGGGCATTATACACAGCAATAGGAATTCCATTGGCTCTTTGTTGTTTTATCTACACTTTTCTCTACTGCACCTATCCAAGAGATAGAGAACGAGCACGTATGGAAGTTTTAATAGAATCAGAGATGCAGCAAATACAATCTGAAAGGCCAACTTCAGGTCCGGGATACTCTCAAGTTCAGTTAGAAGAATCAGACAAGCTATATGCTAGAGATAGAAAAGTCATAGATATGATGGATTATGAAGAAGAGGACGATCTAGATTTTGATGATGATGACGATGATGAAAAGACAGCCCTTTATCGCCAGTTGACATTTTCGACGTTTGTGAAACCATAG 1584 45.14 MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPLAAYLAVRHNRAHVIALGAFLWAAATFLVAFSSTFLQVAVSRALNGIGLALVAPAIQSLVADSTDDNNRGVAFGWLQTTGNLGSIIGGLCSIVLAPRTFMGIPGWRIAFHIVGLISVVVGILVRFFAHDPHFSDDGIKTGNHAPPSNSFWSEVKDLVRESKSVIKIPSFQIIVAQGITGSFPWSALSFATMWLELKGFSHETTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPNSGRIILAQISSASGIPLAAVLLLLLPDGPSTAVVHGLVLIIVGFFISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIATDRGNAASLAWALYTAIGIPLALCCFIYTFLYCTYPRDRERARMEVLIESEMQQIQSERPTSGPGYSQVQLEESDKLYARDRKVIDMMDYEEEDDLDFDDDDDDEKTALYRQLTFSTFVKP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11440544 11444006 + CmoCh01G014730.1 Cmo01g01473 374956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01473 527 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 445 IPR020846 GO:0022857
Cmo01g01473 527 SUPERFAMILY MFS general substrate transporter 6 447 IPR036259 -
Cmo01g01473 527 Gene3D MFS general substrate transporter like domains 4 192 IPR036259 -
Cmo01g01473 527 Gene3D MFS general substrate transporter like domains 228 450 IPR036259 -
Cmo01g01473 527 Pfam Major Facilitator Superfamily 14 379 IPR011701 GO:0022857|GO:0055085
Cmo01g01473 527 PANTHER - 1 521 - -
Cmo01g01473 527 CDD MFS_spinster_like 8 434 IPR044770 -
Cmo01g01473 527 PANTHER SPINSTER 1 521 IPR044770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01473 - - - bhj:120085856 904.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01473 Cmo09g00630 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01473 Cmo-Chr1:11440544 Cmo03g00839 Cmo-Chr3:6675223 0 dispersed
Cmo01g01473 Cmo-Chr1:11440544 Cmo09g00630 Cmo-Chr9:3147727 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g395 . . . . Bpe02g00101 . . Bma01g02618 . . Cma01g01424 Cma09g00647 . . . Cpe06g00507 . . . . . . . . . . . . . . . Cone4ag1346 Cone7ag1585 . . Lsi04g02346 Csa03g04567 . . . . . . . . . . Sed12g1410 Cmo01g01473 Cmo09g00630 . . . Car09g00574 . Cpe02g00523 Bhi09g02610 Tan01g3960 Cmetu04g1462 . Hepe01g2239 Mch11g0787 . Cla11g01497 Cam11g1553 Cec11g1585 Cco11g1581 Clacu11g1711 Cmu11g1530 Cre11g1946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01473 Cmo_Chr01 FPKM 6.557838 7.605134 1.268702 0.94131 0.825836 0.481613 0.685192 0.822549 0.813987 0.828479