Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01476 ATGGAGAAGCTCGGATTTCCAAGCGTGAAGAGGTTAAACCAGTTGAACTCACTGTCTGGTTTGGTACAAGGAACTGCGAAAACGTTCTCCTCTTCGCGTTCCGTTCCAGAACCTACCTCGTCGGGACGTTTTGTCAATTTGAAGATTGCTGCAGAGAGGATGATGAACGATCAGGCTTCTTTGAAGACTGATCTGGATATGGCGAATGCGAAATTGAGGAAATCAGTCGAGCACACACGTGCTTTAGAGGATAAACTGCAGAATGCCTTGAATGAAAATGCCAAGCTCAAGGTGAAGCAGAAAGAAGACGAGAAGTTGTGGAAGGGATTGGAATCGAAATTCTTGTCGGCTAAGACACTGGGTGATAAGCTCACCGAAACATTACAGATTTTAGCCAGTCAGGTTCAGGATGGTACTGAGAAAGACAAGGAGGTTTTAGAAACCAAATTATCTGCAAGTTCTGCTGCTGTTGATGGGTTAACCCAAAGAATGCAGGACTTGTGTATAAAAGTAGAGTCTGCAGAAGAAACAATAAGAAATCGTGAGAAGGAGCTGGCGAAGCTCAAAATTGAGAAAGAGGAGAATTGTAAATTGTACAGAGAAGAACAGCAGAGAACTGCAAATCTGATTGAGGAAAAAGACTCTATGATCAAGAGACTTGAAGAAACAGTTGTGGAGAACAGGTTGATCATAGAGGGACTGAACTCTAAACTGGATGAGGCACAATTAGAGTCAAACTCGAAAGAAGAAAAAATTATTAGTTTGATAGCCTCACGAGATGACTTGCAGAAGGAAAAGAGTGATTTGGAAATGCATAATGATGAGATTCATAAGAAATTAGATGCGTCACTCTTGGAGATCAAAAACCTTGAATATCTCGTCCCTTTTTTGATTGATCAGCTGGTTGAATTTGATCGTCATAACTCAACTTTTGTAGAGAAATTTAATCAGCTAACCCATCTAAATGACTCTTGCTTTAAGCTGGCCAAATTGGAAAGGGATTTTGCTTCGGAGCTGGCCCAAAAGAAATTCAACAAGCTCCATGACAAATTTATGTGTATAACATCAGAAAAAAATGCCCTCAAATTGATAAATGTCGAGTCACAACAAAAGGTTGATGAACTTCAGAAAATCCAGGAATCACTAATGGCACAGCATTCAGAAGAATCTCGTTTAGCAGGAGGGAGAATTCAAAAGTTGGAGTCTGAAGTAGAAACTCTTGTTTCTGAAAAAACTGAGACAGAATCATTGGTTTCCAAGTTAGAGGAGAAAATTGGCACTTTGTCAGAAAGTTCAAGATCATCTGAGAGTAAAATGCAAGATTTGTTAAAGAAGATTTCTGCACTAGAAATTGAGAATCAATGTAATGCAGAAAAATTGGAGAAAGAGTTGCACGATAAAGCAGAAGAGATAGATACTTTGATGAAGGAGAGCAAAAATTATAAACAACGTGCAGAAATGCTTGAGGTAGAAGGAGATCAACTTCGCAATGTTTTGAAGGAAAAGGAAGAGTTTATTCTTTTGTCTATGGAGCGTGAGAAGAAGCTAGAAGAAGAAACTAAAGAGAACCAAGCTCTACTGTTTTCTGCTGAAGTGAAGCTTTCCGATGCTAAAAGACAGTATGATTCAATGCTGGAGAGTAAACAGATGGAGCTATCAAGACATTTGAAAGATATATCCCATAGAAATGATCAGGCTATCAATGACATCCGGAATAAGTATGAAATGGAGAAATTGGAGATTGTTAACAAGGAAAAGGAAAAGGCAGATCAAGTTTTACAAGAGATGGAAAGAAATTGTGAACAAAACCTAGCAGAAGTGAAAGAAGAATCTAGGCAATGCCTGATTCGCATTAAGGAAGAACATGCTGCTCTGTTGAGTCAAATTCAGCAAGAGCATACCAGAAATGAACAAATGTGTAAAGCCAAACACAATGAAGAGTTGCAGCGTGCTCAACTTCATGCTGAGAACGAATTGAAAGAGAAATTGACGTCACTGAGAAGTGAACATGAGGCTCAGATGAAAGCTTTGAGATGTCAAAACGAAGATGAATGTAGGAAGCTTCAAGAGGAATTGGATCTCCAAAAAACCAAAGAAGACAGGCAGAGAGCTTTGTTGCAATTGCAATGGAAAGTGATGGGTGACAAGCTACAAGAGGACCAAGAAGTGAATTCAAAGAAGGACTACTCCATGTCATCAATCAAGATGAGAGGTTCTGGTGGTTCCAGAAAAAGCAAGCGTGCTCTGATTAGAACAGAAAATGATGAGGAATCACCTAACCTGCAAGCAGCTCAAACACCAGTATCACAGTTGTTGAAGTCCGTGGAGGACATAAACACAGGAAGTATTGCAAATATCCCGAAGCACCATAAGAAGGTCAGTTGA 2385 39.58 MEKLGFPSVKRLNQLNSLSGLVQGTAKTFSSSRSVPEPTSSGRFVNLKIAAERMMNDQASLKTDLDMANAKLRKSVEHTRALEDKLQNALNENAKLKVKQKEDEKLWKGLESKFLSAKTLGDKLTETLQILASQVQDGTEKDKEVLETKLSASSAAVDGLTQRMQDLCIKVESAEETIRNREKELAKLKIEKEENCKLYREEQQRTANLIEEKDSMIKRLEETVVENRLIIEGLNSKLDEAQLESNSKEEKIISLIASRDDLQKEKSDLEMHNDEIHKKLDASLLEIKNLEYLVPFLIDQLVEFDRHNSTFVEKFNQLTHLNDSCFKLAKLERDFASELAQKKFNKLHDKFMCITSEKNALKLINVESQQKVDELQKIQESLMAQHSEESRLAGGRIQKLESEVETLVSEKTETESLVSKLEEKIGTLSESSRSSESKMQDLLKKISALEIENQCNAEKLEKELHDKAEEIDTLMKESKNYKQRAEMLEVEGDQLRNVLKEKEEFILLSMEREKKLEEETKENQALLFSAEVKLSDAKRQYDSMLESKQMELSRHLKDISHRNDQAINDIRNKYEMEKLEIVNKEKEKADQVLQEMERNCEQNLAEVKEESRQCLIRIKEEHAALLSQIQQEHTRNEQMCKAKHNEELQRAQLHAENELKEKLTSLRSEHEAQMKALRCQNEDECRKLQEELDLQKTKEDRQRALLQLQWKVMGDKLQEDQEVNSKKDYSMSSIKMRGSGGSRKSKRALIRTENDEESPNLQAAQTPVSQLLKSVEDINTGSIANIPKHHKKVS 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11461460 11467076 - CmoCh01G014760.1 Cmo01g01476 374959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01476 794 Coils Coil 157 194 - -
Cmo01g01476 794 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 1 793 - -
Cmo01g01476 794 Coils Coil 457 491 - -
Cmo01g01476 794 Coils Coil 567 613 - -
Cmo01g01476 794 Coils Coil 259 279 - -
Cmo01g01476 794 MobiDBLite consensus disorder prediction 721 767 - -
Cmo01g01476 794 Coils Coil 231 251 - -
Cmo01g01476 794 Coils Coil 397 424 - -
Cmo01g01476 794 Coils Coil 365 385 - -
Cmo01g01476 794 PANTHER SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED 1 793 - -
Cmo01g01476 794 Coils Coil 432 452 - -
Cmo01g01476 794 Coils Coil 641 687 - -
Cmo01g01476 794 Coils Coil 72 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01476 - - - cmo:103503590 1182.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01476 Cmo09g00627 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01476 Cmo-Chr1:11461460 Cmo09g00627 Cmo-Chr9:3129605 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g405 . . . . Bpe02g00105 . . Bma01g02614 . . Cma01g01428 Cma09g00644 . . . Cpe06g00504 . . . . . . . . . . . . . . . Cone4ag1340 Cone7ag1590 . . Lsi04g02341 Csa03g04563 . . . . Bda11g00764 . . . . . Sed04g0532 Cmo01g01476 Cmo09g00627 . . . Car09g00570 . Cpe02g00520 Bhi09g02606 Tan01g3955 Cmetu04g1898 . Hepe01g2232 Mch11g0782 . Cla11g01493 Cam11g1549 Cec11g1582 Cco11g1577 Clacu11g1708 Cmu11g1527 Cre11g1942 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004016 1 6 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01476 Cmo_Chr01 FPKM 7.780404 9.435168 10.680447 10.774498 21.02005 20.717052 19.484907 9.965852 9.85233 8.978642