Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01483 ATGCTCGTTTCTCTCAACTCAGATAAGGAAATGAGTTCATGTTTCGTTAAGTGTTCATCAACTCGGCTGGAGAACATTGATGAAAATGGCCCTGCAAGTTGGTTACCGGGTTCATGTGTTCTACCTGAAACTCCAATTGAGTCCATGGAGTTTCTTGGCAGATCCTGGAGCCTTTCGGCTAAAGAGCTCTCCAAAGCTCTTTCCACTGCCAATGCTTCAAGTCATGTTCAAAATTCAGTGGTTGGGCTTCTTAGTGCTGAAGCACATGATTCAAACTCCACAGTCTTGAGGGAACCACTACGTCCACACTTACCCAGTGGAGATAGTCCTCCTGCTTCCCCAAGAGGAAGTGACGAAATGAAGGATCTAGTATTACTTCACCAAGCATTGAATCCAGAGTTCCTTTCCAATCAGCATCTACTTGGAAATGGGCTATATAAGAGCATATTGAGAGGCAACAAAACATTAGGGAGGTGGATGAAGGATCAAAAAGAGAGGAAGAAGCAGGAAATCAGAACACAGAATGCTCAGTTACATGCAGCTGTATCTGTGGCAGGTGTTGCTGCTTCAGTAGCAGCATTTATTGCAACGCTCGTGCCGCAAGAAACATCATCAGGTAATCAGAAATGGCCATCAAAGACATCAGCAGCAATTGCTTCTGCAGCTGCTTTAGTTGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCTAGCCATGAACACATCTTGAATGTAGTTAACTCTGCCATCAATGCTAGAACTAATGGAGATATCATGACCCTAACAGCAGGAGCAGCTACAGCTCTAAGAGGAGCTGCAACCCTCAGGTCAAGGCTTGAGAAAGGGTTGGGAGGCACAAACTTTGGGGCGGGAGAGGATAAGGTCGAAGAAGAAGGGAAAGAATCAAACATCTTGATAGCTATTAACTTTGTTTCCAGAGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGAGTTCTCCACTGGAAGCAAGTTTCTTTCAGCATAAATTCTGATTGGCAGGTCGTGGCAAAATTGAAAAGCAGGCACATAGCAGGAACATTTACCAAAAACAAAAAGTGTGTGATCTCAGGTGTGAACTGTGATGTTGCAGCATGGCCCGAGCGGGAAACGGAATCGGACGGCGACGAGCAGAGGGCTTACTTTGGTATAGTAACAACAGATAGAACAATAGAGTTTGAATGCAATGGAAAAGGAGAAAAACAGATGTGGATTGAGGGGATACAATATATGATGAACTTTCGTGCCTACATGAAATGA 1281 44.57 MLVSLNSDKEMSSCFVKCSSTRLENIDENGPASWLPGSCVLPETPIESMEFLGRSWSLSAKELSKALSTANASSHVQNSVVGLLSAEAHDSNSTVLREPLRPHLPSGDSPPASPRGSDEMKDLVLLHQALNPEFLSNQHLLGNGLYKSILRGNKTLGRWMKDQKERKKQEIRTQNAQLHAAVSVAGVAASVAAFIATLVPQETSSGNQKWPSKTSAAIASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRSRLEKGLGGTNFGAGEDKVEEEGKESNILIAINFVSRGGELLKRTRKGVLHWKQVSFSINSDWQVVAKLKSRHIAGTFTKNKKCVISGVNCDVAAWPERETESDGDEQRAYFGIVTTDRTIEFECNGKGEKQMWIEGIQYMMNFRAYMK 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11508164 11510687 + CmoCh01G014830.1 Cmo01g01483 374966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01483 426 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 17 424 - -
Cmo01g01483 426 Pfam Auxin canalisation 42 284 IPR008546 -
Cmo01g01483 426 PANTHER EXPRESSED PROTEIN 17 424 IPR040269 -
Cmo01g01483 426 MobiDBLite consensus disorder prediction 92 118 - -
Cmo01g01483 426 Pfam Plant pleckstrin homology-like region 317 420 IPR013666 -
Cmo01g01483 426 ProSiteProfiles PH domain profile. 311 420 IPR001849 -
Cmo01g01483 426 Gene3D - 309 421 IPR011993 -
Cmo01g01483 426 SUPERFAMILY PH domain-like 314 418 - -
Cmo01g01483 426 Coils Coil 161 181 - -
Cmo01g01483 426 SMART PH_update 312 422 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01483 - - - cmax:111480268 769.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01483 Cmo09g00617 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01483 Cmo-Chr1:11508164 Cmo17g00206 Cmo-Chr17:1206528 1.65E-55 dispersed
Cmo10g00462 Cmo-Chr10:2076512 Cmo01g01483 Cmo-Chr1:11508164 1.37E-16 dispersed
Cmo11g00425 Cmo-Chr11:2096905 Cmo01g01483 Cmo-Chr1:11508164 1.76E-20 dispersed
Cmo01g01483 Cmo-Chr1:11508164 Cmo09g00617 Cmo-Chr9:3084770 2.93E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g305 . Blo12g00757 . . . . Bma04g00405 . . . Cma01g01434 . Car09g00562 . . . . . . . . . . . . . . . . . . . . . Cone20ag0601 Lsi04g02333 Csa03g04553 Chy04g00148 . . . . . . Bpe04g00396 . . Sed01g3987 Cmo01g01483 Cmo09g00617 Cma09g00636 . . . . Cpe02g00513 Bhi09g02582 Tan01g3937 Cmetu09g1599 . Hepe01g2223 Mch11g0774 . . . . . . . . . . . Cme04g00174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010810 0 1 1 1 1 0 2 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 0 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01483 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.411498 2.416318 2.193506 3.301767 0.460464 0.0 0.192246