Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01485 ATGCACGCCAACGCCAACGCCAACGCCATGGCCTTCCATGCTAACAACTCCTTACTCAGCATAATGCTGGACGATGAAAAGCAAACGACGATGCCACAAAGAGAACGAGTAATGGGCGAGCAGCCGGGTTCGAAAGCGATGAAGCCGACCCCTCCGCCCAGCCCTGAATCGCCTTGGATGCTGTCTCCTTTACGGACCCCTTCGCCACTTTTGCTTCATCACTGCATAGCGTCGCTTCATCGTGGAGAAGGGAACATATACTCGATCGCTATTTCGAATGGCGTGGTGTTTACTGGCTCTGATAGCTGCCGCGTTCGTGCATGGAAGCAGCCCGATTGCATGGACCGTGGGTACCTCAAGGCTGCTGCGGGCGGCGTCTGGGCCATTGCTGCCTATGGAAACATGTTGTTCACATCACACAGAGATTCAAGAATCAGAGTATGGAATTTCACAGCTTCACATAACCTGACATCCAAGAAGCTATGTTCACTCCCCAAAAGAACCTCTTTCCTGTTATTCTCCAAAACAGAGACCACCCATCTCCACAAAGACACCATATCCTGCATGGCTTATTACCACGCCCAGGACCTCCTCTACACCGCCTCCCACGACAAAACCGTCAAAGCCTGGCGGATCTCCGACCGAAAATGCGTTGACTCCTTCCTCGCCCATGAGGACAAAGTCAACTCCATAACAGTCAACCAAAATGATGGCTGTCTCTTCACCTGTTCCTCTGATGGAACTGTCAAAATCTGGCGATGTCTATACCGGGAGAACTCCCACACACTCACAATGACACTCAAGTTCCAAACTTCCCCTGTGAATGCTGTCGTTCTCAGCTCCCACTCTGACGGCGAGACGATCCTCTACTCTGGTTCCTCTGATGGGACAATCAACTTTTGGGAAAAGGAGAGGGTTTCTTACAGATATAACCATGGTGGGTTCTTGCAAGGGCATCGATTTGGGGTGCTGTGTTTGGCGGTGGTGGAGAGGCTGGTGTTGAGTGGGTCGGAGGATACGACGGTGAGGATATGGAGGAAGGAGGAGGGGGGTTGTTACCATGAGTGCTTGGCGGTGCTTGATGGGCATAGAGGGCCGGTCAGGTGCCTGGCTGGGAGCTTAGAAATGGATAACATGGATATGAGTTTCTTGGTTTATAGTGGGAGTTTGGATCAGTCGTTTAAGGTCTGGAGAGTGAAGGTAATGTTGGCTGAAGAAGAGAACAATGGTGGGGATTTGAAGATGAACAAGCTTTATGAGATGAGTCCTGTCCTGTCTCCTTCTTGGGTTGAGAAGAAGCTTCAAGCTTCTAACTATTAG 1320 50.83 MHANANANAMAFHANNSLLSIMLDDEKQTTMPQRERVMGEQPGSKAMKPTPPPSPESPWMLSPLRTPSPLLLHHCIASLHRGEGNIYSIAISNGVVFTGSDSCRVRAWKQPDCMDRGYLKAAAGGVWAIAAYGNMLFTSHRDSRIRVWNFTASHNLTSKKLCSLPKRTSFLLFSKTETTHLHKDTISCMAYYHAQDLLYTASHDKTVKAWRISDRKCVDSFLAHEDKVNSITVNQNDGCLFTCSSDGTVKIWRCLYRENSHTLTMTLKFQTSPVNAVVLSSHSDGETILYSGSSDGTINFWEKERVSYRYNHGGFLQGHRFGVLCLAVVERLVLSGSEDTTVRIWRKEEGGCYHECLAVLDGHRGPVRCLAGSLEMDNMDMSFLVYSGSLDQSFKVWRVKVMLAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11510877 11512283 - CmoCh01G014850.1 Cmo01g01485 374968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01485 439 Gene3D - 65 168 IPR015943 GO:0005515
Cmo01g01485 439 Gene3D - 169 436 IPR015943 GO:0005515
Cmo01g01485 439 Pfam WD domain, G-beta repeat 315 345 IPR001680 GO:0005515
Cmo01g01485 439 Pfam WD domain, G-beta repeat 265 301 IPR001680 GO:0005515
Cmo01g01485 439 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Cmo01g01485 439 Pfam WD domain, G-beta repeat 355 397 IPR001680 GO:0005515
Cmo01g01485 439 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Cmo01g01485 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 345 - -
Cmo01g01485 439 MobiDBLite consensus disorder prediction 30 57 - -
Cmo01g01485 439 PANTHER OS01G0232200 PROTEIN 17 433 - -
Cmo01g01485 439 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 433 IPR045182 -
Cmo01g01485 439 SMART WD40_4 112 149 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 309 346 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 72 109 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 353 398 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 214 253 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 260 302 IPR001680 GO:0005515
Cmo01g01485 439 SMART WD40_4 172 211 IPR001680 GO:0005515
Cmo01g01485 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 252 - -
Cmo01g01485 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Cmo01g01485 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 345 IPR001680 GO:0005515
Cmo01g01485 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Cmo01g01485 439 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Cmo01g01485 439 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Cmo01g01485 439 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Cmo01g01485 439 CDD WD40 80 398 - -
Cmo01g01485 439 SUPERFAMILY WD40 repeat-like 78 399 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01485 - - - cpep:111789400 864.374
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01485 Cmo-Chr1:11510877 Cmo14g01334 Cmo-Chr14:11130644 2.56E-142 dispersed
Cmo14g01109 Cmo-Chr14:7460364 Cmo01g01485 Cmo-Chr1:11510877 1.21E-08 dispersed
Cmo01g01485 Cmo-Chr1:11510877 Cmo09g00176 Cmo-Chr9:787047 1.48E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01485 Cmo_Chr01 FPKM 2.243168 3.120206 9.640179 10.858777 48.844467 48.246807 48.817474 10.249667 10.264583 7.783491