Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01487 ATGTCACAAACAGAGGAGCCTCCAACCCAATCCATCAGCCCCACCAGCAGCAACAGCAGCAGCAGCAGCAAGCGCGTTCGAGATTCCAGCAAGCACCCACTCTACCGCGGCGTCCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGCGTAAGAAATCCCGCATTTGGCTCGGCACCTTCCCCACACCCGAGATGGCCGCTAGAGCCCACGACGTCGCTGCCTTATCCATCAAAGGCAACAATTCCGCCATTCTCAACTTCCCTGAACTCGCCCACTCCCTCCCCCGCCCTGCCTCCTTCGCCCCTCGCGACATCCAAGCCGCTGCCGCTAAAGCCGCCCACATGGACCCTTCCCAATACTCTGCTTCCTCCGCCGCCCCCGACGATTCCGACGACCTCGCAGAGATCATCAAACTCCCCAATCTAGGCACCAACTACGACCACTCCATCGGCAATAACGAATTTGTCCTCATGGATTCAAGCGAGAGCTGCTGGGCTTATCCGCCGCCCTGGGTTCGAACCATGGAGGATACAACGGAGGATGGTAATTTCTTGAGGGATTATTGA 579 58.55 MSQTEEPPTQSISPTSSNSSSSSKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNNSAILNFPELAHSLPRPASFAPRDIQAAAAKAAHMDPSQYSASSAAPDDSDDLAEIIKLPNLGTNYDHSIGNNEFVLMDSSESCWAYPPPWVRTMEDTTEDGNFLRDY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11520959 11521537 + CmoCh01G014870.1 Cmo01g01487 374970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01487 192 MobiDBLite consensus disorder prediction 1 24 - -
Cmo01g01487 192 ProSiteProfiles AP2/ERF domain profile. 34 92 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 CDD AP2 33 94 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 181 - -
Cmo01g01487 192 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Cmo01g01487 192 SMART rav1_2 34 98 IPR001471 GO:0003700|GO:0006355
Cmo01g01487 192 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Cmo01g01487 192 MobiDBLite consensus disorder prediction 1 33 - -
Cmo01g01487 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01487 Cmo-Chr1:11520959 Cmo12g00206 Cmo-Chr12:1361052 1.13E-67 dispersed
Cmo01g01487 Cmo-Chr1:11520959 Cmo09g00617 Cmo-Chr9:3084770 2.79E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9116 PF00847 AP2 4.20E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01487 K09286 - csv:101217333 220.32