Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01487 | ATGTCACAAACAGAGGAGCCTCCAACCCAATCCATCAGCCCCACCAGCAGCAACAGCAGCAGCAGCAGCAAGCGCGTTCGAGATTCCAGCAAGCACCCACTCTACCGCGGCGTCCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGCGTAAGAAATCCCGCATTTGGCTCGGCACCTTCCCCACACCCGAGATGGCCGCTAGAGCCCACGACGTCGCTGCCTTATCCATCAAAGGCAACAATTCCGCCATTCTCAACTTCCCTGAACTCGCCCACTCCCTCCCCCGCCCTGCCTCCTTCGCCCCTCGCGACATCCAAGCCGCTGCCGCTAAAGCCGCCCACATGGACCCTTCCCAATACTCTGCTTCCTCCGCCGCCCCCGACGATTCCGACGACCTCGCAGAGATCATCAAACTCCCCAATCTAGGCACCAACTACGACCACTCCATCGGCAATAACGAATTTGTCCTCATGGATTCAAGCGAGAGCTGCTGGGCTTATCCGCCGCCCTGGGTTCGAACCATGGAGGATACAACGGAGGATGGTAATTTCTTGAGGGATTATTGA | 579 | 58.55 | MSQTEEPPTQSISPTSSNSSSSSKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNNSAILNFPELAHSLPRPASFAPRDIQAAAAKAAHMDPSQYSASSAAPDDSDDLAEIIKLPNLGTNYDHSIGNNEFVLMDSSESCWAYPPPWVRTMEDTTEDGNFLRDY | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11520959 | 11521537 | + | CmoCh01G014870.1 | Cmo01g01487 | 374970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01487 | 192 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo01g01487 | 192 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | Pfam | AP2 domain | 33 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | CDD | AP2 | 33 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 9 | 181 | - | - | |
Cmo01g01487 | 192 | Gene3D | AP2/ERF domain | 34 | 93 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | SMART | rav1_2 | 34 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01487 | 192 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677 | |
Cmo01g01487 | 192 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cmo01g01487 | 192 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01487 | Cmo-Chr1:11520959 | Cmo12g00206 | Cmo-Chr12:1361052 | 1.13E-67 | dispersed | |
Cmo01g01487 | Cmo-Chr1:11520959 | Cmo09g00617 | Cmo-Chr9:3084770 | 2.79E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9116 | PF00847 | AP2 | 4.20E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01487 | K09286 | - | csv:101217333 | 220.32 |