Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01488 ATGTTGGGTTCATCTAATTCTTCCAGAAAGAAGCAACAAGTGAAGCCAGAAAAAGAATGGCTCTCGGTGAGTTTCAGACCCGAGAATTTCATACCAGGCCTCGTTATTGGTTTCATTGCTGGGTTCTTGTTGGATTTGTCAAAACCTAGTAAAGGCAATGCTAAGAAGGGCTATTTTTTGCCTTCCAAGTACCAACAGATATCTCCAGCTTCAAACAACGGTGATCAAGAGCTCAAATTGGTACTTGTTGTGAGGCAAGATCTGAAGATGGGTTCTGGAAAAATTGCATCTCAATGCGCTCATGCTGCTACTGGCTTGTATGCACAACTAATGCAAAGCCACCGAAACCTTTTGAGACAATGGGAGCTATGTGGGCAACCAAAAATAGTTGTAACATGCAAGAATCAACAAGAAATGAATAAACTGAAGGATGCAGCTGAGAACGTTGGCCTCCCTACTTTTGTTGTTGCTGATGCTGGACGCACGCAGGTTTCAGCTGGATCAAAGACTGTTCTTGCCATTGGACCTGGGCCAAAGGAGTTCATCGATGCCGTAACTGGAAAACTCCGCCTACTCTACATTCATCTCATTGAGGTCTCAAGAAGGGTTGATGCACATGGCGGCGGCCAAGTTGTAGCTGCTAGTAAGGAAGAAATGCTCGGTTGA 666 44.74 MLGSSNSSRKKQQVKPEKEWLSVSFRPENFIPGLVIGFIAGFLLDLSKPSKGNAKKGYFLPSKYQQISPASNNGDQELKLVLVVRQDLKMGSGKIASQCAHAATGLYAQLMQSHRNLLRQWELCGQPKIVVTCKNQQEMNKLKDAAENVGLPTFVVADAGRTQVSAGSKTVLAIGPGPKEFIDAVTGKLRLLYIHLIEVSRRVDAHGGGQVVAASKEEMLG 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11526062 11529828 + CmoCh01G014880.1 Cmo01g01488 374971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01488 221 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 78 192 IPR002833 GO:0004045
Cmo01g01488 221 CDD PTH2 79 192 IPR002833 GO:0004045
Cmo01g01488 221 Pfam Peptidyl-tRNA hydrolase PTH2 78 192 IPR002833 GO:0004045
Cmo01g01488 221 SUPERFAMILY Peptidyl-tRNA hydrolase II 77 192 IPR023476 -
Cmo01g01488 221 Gene3D Bit1 73 192 IPR023476 -
Cmo01g01488 221 PANTHER PEPTIDYL-TRNA HYDROLASE 2 5 192 IPR002833 GO:0004045
Cmo01g01488 221 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 5 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01488 K04794 PTH2, PTRH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] - csv:101217564 361.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01488 Cmo-Chr1:11526062 Cmo20g00932 Cmo-Chr20:4826968 6.08E-35 transposed
Cmo01g01488 Cmo-Chr1:11526062 Cmo02g00471 Cmo-Chr2:2538375 9.69E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g281 . Blo12g00753 . Bda03g00431 . . Bma04g00409 . . . Cma01g01438 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02330 Csa03g04549 Chy04g00153 . . . . . . Bpe04g00399 . . . Cmo01g01488 . . . . . . Cpe02g00510 Bhi09g02577 . . . . . . . . . . . . . . . . Cme04g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011134 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01488 Cmo_Chr01 FPKM 0.0 0.0 1.305924 1.474526 0.0 0.0 0.0 0.0 0.0 0.0