Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01491 ATGGATGATCACCTTGCATTTCGAAATGCCTTCAAACACAACATTATTTCGGCTTCATCTTGTTCCAGCGACTTCTGTGTAGACATTGTGACCTTGATTGCCGCCTCCATGACTTTGGATGCAGATTTAAGGTGCAGGACTGTTGTTAGTTGTCACTGGTTGGCATGCGCGGCAGAGAGGCCTGCTTGGTTCATGCTTTTGGTGTTGTCTGTTTCGACCTTCCTTGTGCTTACTAAGATCTCCCTCCGAGAAGGATCAACGACCAATATGATAGAATTTTCTCCTCACCCAATCTCTCCTCATTCACATCTCTCAATCTTCCCTTCTCTTTCGCTCTTTCCTTTTAATTTCTCCATACCATTTTCATTTTACAGTGTTCTACTCACAATCCTGTCGTCCGGTTCTGGATTTTCGCTTTCTGATTCTCTGTTGCTGAAGCCGCCATTTGGGTTTTTGTTTTTTTGGATGATTATGGCGGAGGTGTCGTCTTTGCTTTCTGTGGGGATGATGGCTGTGACCTCCAGCTGCAAAGATGCTGCTAGCATGGATAATGGCAAATATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGATTGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAACAGAGGAAGGAATCATCACGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGCTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACGAGTTGTGAGTCAGTGGTTACAAGTGGTCAACAGAATTTGACCCCGCCGCATCCTCCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGCTGCACTGGAGTTGCAGCTCGTGCGTGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTATCGCGATTGCCGTGCTGTTGACGTTCTAAACGCCCTATCTACTGGTAATGGAGGAACCATTGAGCTTCTTTATATGCAGCTCTATGCGCCTACCACTCTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCTAGTGGATATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATTCATATAGTTGATCACATGGATTTAGATCCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGCTACTGGTTGGGGAAGACGACCTGCTGCTCTTCGCGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGACGGCATTGATGATGTTACACTTCTTGTAACCATGTCTAATGGCAAGACAATGATGGGTGCAAATATTTCATATAATAATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACACCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTCACTCTTCCCTTGGCACAAACGGTTGAGCATGAAGAGTTTATGGAAGTTCTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGTCTGGTGACATCTTCCTCCTCCAACTTTGCAATGGCGTGGAAGAGAATGCAGTAGGAACTTCTGCTGAACTCATCTTTGCTCCCATTGATGCCTCTTTTTCTGATGATGCACCCATTTTGGCATCTGGCTTCCGTATCATCCCTCTTGATTCTGGACTGGATGCTTCAAGTCCAAACCGCACGCTTGATCTTGCTTCAGCTCTTGATGTCGGACCGGCAGGGAATAGAGCTGCTGGTGATTATGCTTGTCAATCAGGAAAATCCAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCATCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGAAGCATTATAGCATCTGTTCAGAAAGTGGCACTGGCTCTTTCCCCTTCGAATGTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTACATGGGCATGGACTTACTGAAAAATGAAGGAAGAGAACCCGTTCTCAAATCCCTTTGGCATCACTTAGATGCAGTCATGTGCTGCTCTTTAAAGGCTTTGCCAAATTTTACATTTGCAAATCAATCTGGGCTTGACATGCTTGAGACAACCTTGGTGGCTCTGCAAGACATTACTCTAGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGACACAGAGTTCCCACGGATAATGCAGCAGGGGTTCCTTTGTCTTCAAGGGGGTGTATGCTTATCAAGCATGGGAAGGGCAGTATCATATGAGAAAGCTGTGGCTTGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGTTTCATGTTTATGAACTGGTCTTTTGTTTGA 3021 45.38 MDDHLAFRNAFKHNIISASSCSSDFCVDIVTLIAASMTLDADLRCRTVVSCHWLACAAERPAWFMLLVLSVSTFLVLTKISLREGSTTNMIEFSPHPISPHSHLSIFPSLSLFPFNFSIPFSFYSVLLTILSSGSGFSLSDSLLLKPPFGFLFFWMIMAEVSSLLSVGMMAVTSSCKDAASMDNGKYVRYTPEQVEALERLYYDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWYRDCRAVDVLNALSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLDPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNATGWGRRPAALRALSQRLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVTMSNGKTMMGANISYNNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADTSIDAYSAAAIKTGQCGLPGSHAGTFGGQVTLPLAQTVEHEEFMEVLKFENVGHYRDDMLMSGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILASGFRIIPLDSGLDASSPNRTLDLASALDVGPAGNRAAGDYACQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQKVALALSPSNVGPHANLQTPAGAPEAQTLARWICQSYRCYMGMDLLKNEGREPVLKSLWHHLDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLDTEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11533557 11545496 + CmoCh01G014910.1 Cmo01g01491 374974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01491 1006 Pfam START domain 330 538 IPR002913 GO:0008289
Cmo01g01491 1006 SMART START_1 329 539 IPR002913 GO:0008289
Cmo01g01491 1006 SMART HOX_1 183 249 IPR001356 GO:0003677
Cmo01g01491 1006 Gene3D - 364 541 IPR023393 -
Cmo01g01491 1006 Pfam MEKHLA domain 865 1005 IPR013978 -
Cmo01g01491 1006 SUPERFAMILY Bet v1-like 329 539 - -
Cmo01g01491 1006 PANTHER CLASS III HD-ZIP PROTEIN CNA1 174 1006 - -
Cmo01g01491 1006 Gene3D - 178 252 - -
Cmo01g01491 1006 CDD homeodomain 186 246 IPR001356 GO:0003677
Cmo01g01491 1006 CDD START_ArGLABRA2_like 324 539 - -
Cmo01g01491 1006 SUPERFAMILY Homeodomain-like 186 247 IPR009057 -
Cmo01g01491 1006 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 174 1006 IPR044830 GO:0003700
Cmo01g01491 1006 CDD bZIP 238 277 - -
Cmo01g01491 1006 ProSiteProfiles START domain profile. 320 534 IPR002913 GO:0008289
Cmo01g01491 1006 ProSiteProfiles 'Homeobox' domain profile. 181 245 IPR001356 GO:0003677
Cmo01g01491 1006 Coils Coil 255 282 - -
Cmo01g01491 1006 Pfam Homeodomain 186 244 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01491 Cmo09g00613 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01491 Cmo-Chr1:11533557 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo01g01491 Cmo-Chr1:11533557 Cmo09g00613 Cmo-Chr9:3058447 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9117 PF01852 START 4.30E-54 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01491 K09338 - csv:101218438 1622.06