Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01494 ATGGGGAAGAGAAGACCCATAAGATTCTTCTTCTTCTTCTTCTTCTTCTTGTTTCTGTTGAATCGGCATTCAACTGCTCTGCAACTCCACCGCCATGAAACCCACCTTCTTTTCTCCTTCAAAGCTTCCGTTCACACAGACCCATCTCGCCTTCTCTCCAATTGGGATCTCTCCGTTCCCGTCTGCAACTGGAACGGCATCACATGCACCGGAGACAATGCTACCATCGTTTCCGTCGACCTCTCCGGTAAGAATCTCACCGGCGTAATTCCCGACTCTGTTTTCCGCCTACAGAACCTCCGAATTCTGGACCTTTCCGACAACCAATTCGTCGGAGAACTCCCTCGGAATATCTTCTCTGTCGCCTCTTCTTCCCTTCTCCATTTGAATTTGAGCAACAATAACATCACCGGCAAACTCCCTTCTGGCGGCGTTCATGGTCTCCAAACGTTGGACTTATCCAACAACATGATTTCCGGTTCAATTCCGACAGATATCGGATTGTTCTTTGATCTTCAGTTTCTTGATCTCGGAGGGAATGCTTTAATCTCCGAAGTTCCGAATTCCCTTGCGAATCTCTCATCGTTGGAGTTTTTGACATTGGCGTCTAATAAACTCACCGGAGAAATTCCGAGGGATTTGGCCGGATTGAAGCGGCTGAAATGGATTTATTTGGGTTTCAATGAATTTTCCGGCGAGATTCCTGAAGAAATCGGCCAATTGGGTTCTTTAAATCATCTTGATCTTGTTTACAACAAGCTAACGGGGAGAATTCCGGCGGCGTTGGGGAATCTCTCTCAACTTGAGTATCTATTTCTCTACCAAAATTGTCTCGCCGGTTCGATTCCTCCGTCGATTTTTAGTTTGGTGAATTTGATATCTCTCGATGTTAGCGATAATTCTCTGTCGGGAGAGATTCCGGAGCTCGTAATTCAATTGAAGAATTTGGAGATTTTGCATCTGTTTCGGAACAATTTCACCGGAAAAATTCCGACAGCTTTGGCTGCTCTGTCCCGGTTGCAGATTCTTCAGTTATGGTCCAATGGATTTTCCGGCGAGATTCCGGCGTTACTTGGAACACAGAACAATCTCACTGTTCTTGATGTTTCAACTAATTATCTTACCGGAAAAATCCCACATGGGCTTTGTGATTCTAAACGCTTATTTAAGCTTATCCTGTTTTCAAATTCGCTAAACGGCGAAATTCCAGAGAGTCTCTGTTTTTGCAGGAGTTTACGGCGTGTTCGGCTTCAAAACAACCGTCTCTCCGGCGAATTGTGTCCGGGATTTACGAAATTACCTCTACTTTACTTTTTGGATATCTCTGGCAACCGATTTTCCGGCGGGATCGACGGCGAGAAATGGGAGTTGCCGGCTCTTCAGATGATGAGTTTAGCGAGGAATAAGTTTTCAGGGGACTTGCCGGAACTGATCGGGAGTAATGAAATCGTGAGTTTGGATTTCTCGGCGAATGAATTTTCCGGTTCCGTCCCGGAGAGTATCGGAAGGTTATCGGAGCTAATGAAGCTAAATTTGAGCAACAATTATCTCTCCGGTCGAATTCCAGGTGAAATCTCTTCTTGTAAGAAGCTCGTGAGTTTGGATTTAAGTAACAATAAACTCACCGGCGAAATCCCGGCGGTTCTCAGTCGTATTCCGGTTCTCAGCTTCCTCGATTTATCGGAAAACGAACTCTCCGGCGAAATCCCACCGATTTTAGGCCGAGTTGCATCGCTCGTTCAGATAAATATCTCTAACAATCACTTCCACGGAAGATTGCCGGCCACCGGAGCCTTTTTAGCCATAAATAACAGCGCCGTCGCCGGGAACAATCTCTGTGGCGGCGACATTAGCAGCAATCTACCGACTTGCGAAAATGGCGTTAAAAAAAGACGCTACAGCCAGTTGTGGTGGATTACGGTCATATTGGCGGCGATAGTGGTGGCGACGGCGGTTTTTGTCAGAATACGCCGTCGTAAGCAGCGGATGGGAGAGAAAAGAGTGCAAAACGAGGAGGGAATTTGGGAGCTGAAATTGTTCGATCTCAAATCGTCCAAATTCGTCACGGTAGACGCCATTCTGCAATCCGCCGGGAAAGCAAACGAAACGGAGATTCAATTCGTGGTGGAGAAAATTAACGGGAATATATCGGCCGGAATTGGGGAGGCGGCGGAATTGGGGAGGCTTAGACATTCTAATATCGTACGGCTGTTGGCGGCGTGTCGGTCGGACAAAACAGGGTATTTGGTACGAGAATATGTGCAGGGGCGGCGCTTGAGCCAAATTGTTGGGAATTTGAGCTGGGAACGACGTCGTAACATCGCCCTGGGAATTGGCCGGGGGCTGCAATTCTTGCACTCCCACTGTTCTCCCGGTGTAATTGCGGCGAATTTTTCGCCGGAGAAGATCATTGTCGATGAAAAATATGAACCCCGGCTGGTTGTCGGATTGTCCAGCGCCGCCGTTTCTCCGCACTACGCCGCCCCCGAGACGAAGGAAAGTGGAGACATAACGGAGAAAAGCAATGTGTACACATTGGGGCTTGTTCTTATTCAATTACTGACCGGAAAGATGGCCGTCCACCGGCAAGAGGTGGTGGAATGGGCACGGTCCGATTGTCGTGCTGAGACGTGGGTTGTTGGTGGTGCGGTTACCGGCGCCACCGAGCAGGACCAGATGGTGGGGTTTATGAACTTGGCTCTGGACTGTACCGCCGGTGACCCCATGGCGAGGCCGTCCTCGGAGGTTGCCTACAAAACCATGCTCTCTCTTTGTCGGATCACTTGCTGTTCTAAACTTTTGTTCACCTAA 2811 48.38 MGKRRPIRFFFFFFFFLFLLNRHSTALQLHRHETHLLFSFKASVHTDPSRLLSNWDLSVPVCNWNGITCTGDNATIVSVDLSGKNLTGVIPDSVFRLQNLRILDLSDNQFVGELPRNIFSVASSSLLHLNLSNNNITGKLPSGGVHGLQTLDLSNNMISGSIPTDIGLFFDLQFLDLGGNALISEVPNSLANLSSLEFLTLASNKLTGEIPRDLAGLKRLKWIYLGFNEFSGEIPEEIGQLGSLNHLDLVYNKLTGRIPAALGNLSQLEYLFLYQNCLAGSIPPSIFSLVNLISLDVSDNSLSGEIPELVIQLKNLEILHLFRNNFTGKIPTALAALSRLQILQLWSNGFSGEIPALLGTQNNLTVLDVSTNYLTGKIPHGLCDSKRLFKLILFSNSLNGEIPESLCFCRSLRRVRLQNNRLSGELCPGFTKLPLLYFLDISGNRFSGGIDGEKWELPALQMMSLARNKFSGDLPELIGSNEIVSLDFSANEFSGSVPESIGRLSELMKLNLSNNYLSGRIPGEISSCKKLVSLDLSNNKLTGEIPAVLSRIPVLSFLDLSENELSGEIPPILGRVASLVQINISNNHFHGRLPATGAFLAINNSAVAGNNLCGGDISSNLPTCENGVKKRRYSQLWWITVILAAIVVATAVFVRIRRRKQRMGEKRVQNEEGIWELKLFDLKSSKFVTVDAILQSAGKANETEIQFVVEKINGNISAGIGEAAELGRLRHSNIVRLLAACRSDKTGYLVREYVQGRRLSQIVGNLSWERRRNIALGIGRGLQFLHSHCSPGVIAANFSPEKIIVDEKYEPRLVVGLSSAAVSPHYAAPETKESGDITEKSNVYTLGLVLIQLLTGKMAVHRQEVVEWARSDCRAETWVVGGAVTGATEQDQMVGFMNLALDCTAGDPMARPSSEVAYKTMLSLCRITCCSKLLFT 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11551326 11554333 - CmoCh01G014940.1 Cmo01g01494 374977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01494 936 ProSiteProfiles Protein kinase domain profile. 642 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01494 936 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Cmo01g01494 936 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Cmo01g01494 936 Gene3D Ribonuclease Inhibitor 479 622 IPR032675 -
Cmo01g01494 936 Gene3D Ribonuclease Inhibitor 379 478 IPR032675 -
Cmo01g01494 936 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cmo01g01494 936 PANTHER LEUCINE-RICH REPEAT PROTEIN, PLANT-TYPE-RELATED 7 924 - -
Cmo01g01494 936 Pfam Protein kinase domain 720 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01494 936 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Cmo01g01494 936 SMART LRR_typ_2 97 121 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 457 481 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 313 337 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 217 241 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 193 216 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 145 169 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 265 289 IPR003591 -
Cmo01g01494 936 SMART LRR_typ_2 504 528 IPR003591 -
Cmo01g01494 936 Pfam Leucine rich repeat 172 229 IPR001611 GO:0005515
Cmo01g01494 936 Pfam Leucine rich repeat 485 541 IPR001611 GO:0005515
Cmo01g01494 936 PRINTS Leucine-rich repeat signature 531 544 - -
Cmo01g01494 936 PRINTS Leucine-rich repeat signature 552 565 - -
Cmo01g01494 936 Gene3D Ribonuclease Inhibitor 282 378 IPR032675 -
Cmo01g01494 936 Gene3D Transferase(Phosphotransferase) domain 1 719 925 - -
Cmo01g01494 936 SUPERFAMILY L domain-like 50 376 - -
Cmo01g01494 936 SUPERFAMILY RNI-like 281 591 - -
Cmo01g01494 936 SUPERFAMILY Protein kinase-like (PK-like) 721 918 IPR011009 -
Cmo01g01494 936 PANTHER UNNAMED PRODUCT 7 924 - -
Cmo01g01494 936 Pfam Leucine Rich repeat 123 138 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01494 - - - csv:101218670 1181.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01494 Cmo09g00612 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01494 Cmo-Chr1:11551326 Cmo02g01759 Cmo-Chr2:10066921 1.59E-158 dispersed
Cmo01g01494 Cmo-Chr1:11551326 Cmo09g00612 Cmo-Chr9:3049038 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006305 1 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 3 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74057 PF00069 Pkinase 2.40E-17 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01494 Cmo_Chr01 FPKM 1.077972 1.310809 1.430177 1.316111 2.917617 2.959855 3.466673 2.404662 2.849499 3.109892