Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01497 ATGGGCAGGTGTCCTGAGCTTCTTGATCTGATCTCTATGAACAGGGAATGGAAGTTGACTAGAAATGGTGGTGAAAGCTCTGTGAGTGAGAACAATAAAACAGAACTGAGACTTGGATTGCCAGGAGGAGAAGGAGAAGAAAGCAGCAACAGCAGCAGCAGCTTGAATATTAACCATGAAAGTGGTGAATTTCTTGTCCCTTCTGCTAAGCTTTTTCCTTGTTGTTTGAACATTAGAAGCAACAAAAGATCGGTTTATGAAAAAGGTGAAGGAATTGCAGGAAATGATGAATTCCAACCCCACAAGCTGATTGCTTCCTTACCATCTTCAGCTTTTCAAAGGGAAGCACACAAGCTGGAGTTGGTGCCGTATTTGCAACATTTTTTGATGACCCAGAAACTGGAGTTGGTGTCAGAGGAGGCATCAAAGGCATGCAGTTTGAAAACAGCTGAGTTTCCTTACTTGAATGGGCAATCATGTCCGGACACTGCTTCTGTTCCTGCTGATTTATCTCAAGAACCTAAACACCATCACAAAAGGGCTTCGGTGGCATCAGCTGTTGGTTGGCCTCCCATCCGTTCATCCAGGAAGAGCTATGTTGTCCCCCGCTCTTCAAAGCCTAACCCTCTTGAGTTGTCAAAAGAAGCCGTGAAGGAGGGGAATGCCTCAAAATCCGACTGTTGCAGTGGACAAATGTTTGTAAAAGTCTCACAAAAAGGTTATCTGGCTGCTGAAGATGGGAGAAAGATGGAGGAAACAACAACATTGTCTGATTCCAAACAGATGAACGGGATGTATACTCTGGTTTACTATGATAATGAAGGGGACAGGATGCTTGTTGGCTTCATTTTCATGCAGCATGTTTGTTTCCACTGTGAAGAGGCTACATGTGTTAAAGAGCTCTGCCATTGCCACCGAAAAGAAGTGAATTTCCTTTCAAAAACTCAAACATACACATCTGAAAGCGGTTCCTCAGCCTTCGAACTTCGTCTGCCAATTCGTCTAATCACCCTGGCTGTCCTTCACGACTACAACCACCGCAGAATCATCCACCTTCTTCTACGATGCGCCGCCCAGCTTTCAATGCGTCAGCTTTTCGAAATCCAAGCCCAACTCCTCGCCTCCCCCATCCCCTCCATCGACCCCAATATCGTAGCAGTCAAGTTCATCGGCGTTTCTTCTTCCCATGGCAACCTGCGCCACTCTGTTCTCGTCTTCAATCACTATCTTAATTCTCCCAACATCTTTGCCTACAATGCTCTTCTCAAAGCCTTCGCTCAACACAACGCTTGGCACAAGACTATTGCTTACTTCAATAACCAGGTGGTAGTGCCTGATGCGCCAAACCCAGATGAGTATACCTTCACTTCTGTGCTCAAGGCCTGCGCTGGCCTTGCCCAGGTCCTTGAAGGCCAAAAAGTTCATTGTTTTGTGACTAAATATGGCTGTGAATCCAATCTGTTTGTGAGGAATTCACTGGTGGATTTGTATTTTAAGGTGGGTTGCAATTGGATTGCCCAGAAGCTGTTTGATGAAATGTCTGTGAGAGATGTTGTTTCATGGAACACTTTGATTTCGGGGTATTGTTTTAGTGGAATGGTGGATAAAGCCCGGATGGTTTTTGATGGGATGATGGTGAAAAACTTGGTGTCCTGGTCGACGATGATCAGTGGCTATGCAAGGATGGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGGTATGCACAGAATGAGAAGTATGCAGATGCAATTGAGTTGTTCAGGCAAATGCAGCATGAAGGCGACCCGGCACCCAACGATGTAACGCTTGTTAGTGTACTTTCGGCTTGTGCACATCTTGGTGCTCTCGATCTGGGGAAATGGATTCACAAGTTTATAAGACGAAGCAAGATGGAAGTAGGGCTGTTTTTAGGGAATGCATTGGCAGACATGTATGCAAAATGTGGATGCATATTGGAGGCCAAGAGGGTGTTTCATGAAATGCAGGAGAGAGATGTGACCTCATGGAGTATAATAATTATGGGGTTGGCTATGTATGGCTATGCAGATGAAGCATTCAAGTGCTTTGCTAAAATGATTGAAGATGATGGTTTAAAGCCAAATGATATTTCCTTCATGGGTTTATTAACAGCCTGCACTCATGCTGGGTTGGTCGATAAGGGGCTGAAGTATTTTGACATGATGGCTGAAGTTTATGGTATTACTCCTAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGCAGGGCGTCTTGATCAAGCCGAGTCTTTGATTAACTCTATGCCTATGCAGCCTAATGTAATAGTTTGGGGTGCACTACTTGGTGGTTGTCGAATATACAAAGATGCAGAACGAGGAGAATGCACGGTTCGACACATACTTGAACTAGACTCGAGTCATTCTGGAAGTCTTGTGTACCTGGCCAATATTTATGCTTCAATGGGTAGACTGGACGATGCAGCTAATTGTCGGTTGAAAATGCGAGACAACAAGTCAATGAAAACTCCAGGCTGCAGTTGGATTGAGATCGATAACTCGGTTTATGAATTTTTCATGGGGGACTTGTCGCATCCTCAATCTGCAAAAATATACTCAATGATTAGAGAATTGAAGTGGAAGATGAAACTTGCGGGATATAAACCAAAGACTGACCTTGTGATTCATAATATAGATGAAGAAGAGAAGGAGGATGCTCTTTCTACTCATAGCGAGAAGCTCGCACTTGCATTTGGGCTTATCAATACCAGTGAGGGCACGACAATCAGAATAGTTAAGAACTTGAGAGTTTGCGACGACTGTCATGATGCAATGAAAATAATCTCGAAAATCGTTGAGCGAGAGATTGTCGTTCGAGATCGAAGTCGTTTTCACCACTTCAAAAATGGTAAATGTTCTTGTAATGACTACTGGTAA 2970 44.14 MGRCPELLDLISMNREWKLTRNGGESSVSENNKTELRLGLPGGEGEESSNSSSSLNINHESGEFLVPSAKLFPCCLNIRSNKRSVYEKGEGIAGNDEFQPHKLIASLPSSAFQREAHKLELVPYLQHFLMTQKLELVSEEASKACSLKTAEFPYLNGQSCPDTASVPADLSQEPKHHHKRASVASAVGWPPIRSSRKSYVVPRSSKPNPLELSKEAVKEGNASKSDCCSGQMFVKVSQKGYLAAEDGRKMEETTTLSDSKQMNGMYTLVYYDNEGDRMLVGFIFMQHVCFHCEEATCVKELCHCHRKEVNFLSKTQTYTSESGSSAFELRLPIRLITLAVLHDYNHRRIIHLLLRCAAQLSMRQLFEIQAQLLASPIPSIDPNIVAVKFIGVSSSHGNLRHSVLVFNHYLNSPNIFAYNALLKAFAQHNAWHKTIAYFNNQVVVPDAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNWIAQKLFDEMSVRDVVSWNTLISGYCFSGMVDKARMVFDGMMVKNLVSWSTMISGYARMGNLEEARHLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGDPAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRSKMEVGLFLGNALADMYAKCGCILEAKRVFHEMQERDVTSWSIIIMGLAMYGYADEAFKCFAKMIEDDGLKPNDISFMGLLTACTHAGLVDKGLKYFDMMAEVYGITPKVEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGECTVRHILELDSSHSGSLVYLANIYASMGRLDDAANCRLKMRDNKSMKTPGCSWIEIDNSVYEFFMGDLSHPQSAKIYSMIRELKWKMKLAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCDDCHDAMKIISKIVEREIVVRDRSRFHHFKNGKCSCNDYW 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11574731 11582050 + CmoCh01G014970.1 Cmo01g01497 374980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01497 989 MobiDBLite consensus disorder prediction 21 55 - -
Cmo01g01497 989 Pfam AUX/IAA family 33 241 IPR033389 -
Cmo01g01497 989 MobiDBLite consensus disorder prediction 165 184 - -
Cmo01g01497 989 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 362 949 - -
Cmo01g01497 989 Pfam E motif 799 861 IPR046848 -
Cmo01g01497 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Cmo01g01497 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 547 IPR002885 -
Cmo01g01497 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 716 IPR002885 -
Cmo01g01497 989 SUPERFAMILY TPR-like 559 842 IPR011990 GO:0005515
Cmo01g01497 989 Pfam PPR repeat 516 544 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat 548 575 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat family 578 627 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat 684 711 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat 756 780 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat 720 745 IPR002885 -
Cmo01g01497 989 Pfam PPR repeat 655 681 IPR002885 -
Cmo01g01497 989 Gene3D Tetratricopeptide repeat domain 659 871 IPR011990 GO:0005515
Cmo01g01497 989 Pfam DYW family of nucleic acid deaminases 897 989 IPR032867 GO:0008270
Cmo01g01497 989 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 362 949 - -
Cmo01g01497 989 TIGRFAM PPR: pentatricopeptide repeat domain 550 580 IPR002885 -
Cmo01g01497 989 TIGRFAM PPR: pentatricopeptide repeat domain 581 610 IPR002885 -
Cmo01g01497 989 TIGRFAM PPR: pentatricopeptide repeat domain 519 549 IPR002885 -
Cmo01g01497 989 TIGRFAM PPR: pentatricopeptide repeat domain 655 682 IPR002885 -
Cmo01g01497 989 TIGRFAM PPR: pentatricopeptide repeat domain 684 717 IPR002885 -
Cmo01g01497 989 Gene3D Tetratricopeptide repeat domain 380 474 IPR011990 GO:0005515
Cmo01g01497 989 Gene3D Tetratricopeptide repeat domain 548 634 IPR011990 GO:0005515
Cmo01g01497 989 Gene3D Tetratricopeptide repeat domain 475 547 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01497 - - - csv:101222145 1232.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01497 Cmo-Chr1:11574731 Cmo11g01292 Cmo-Chr11:8763304 0 dispersed
Cmo01g01108 Cmo-Chr1:9205514 Cmo01g01497 Cmo-Chr1:11574731 5.45E-174 transposed
Cmo08g00609 Cmo-Chr8:3701474 Cmo01g01497 Cmo-Chr1:11574731 1.10E-15 transposed
Cmo08g00932 Cmo-Chr8:6065981 Cmo01g01497 Cmo-Chr1:11574731 1.17E-169 transposed
Cmo14g02188 Cmo-Chr14:15635652 Cmo01g01497 Cmo-Chr1:11574731 1.99E-120 transposed
Cmo01g01497 Cmo-Chr1:11574731 Cmo09g00610 Cmo-Chr9:3028204 1.11E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00165 . . . . . . . . . . Cmo01g01497 . . . . . . . Bhi09g02560 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014431 1 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 17
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9118 PF02309 AUX_IAA 1.70E-12 CL0072 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01497 Cmo_Chr01 FPKM 21.249386 23.829912 9.863927 10.20351 9.182691 8.50142 8.671294 8.667641 8.251565 7.779461