Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01502 ATGAAGCTGCTAGGATGGTGGCTGATGCTGGTGGGATCGCTCCGGTTGGCCTCCGTTTGGTTCGGATTCTTCGATATATGGGCGTTGAGGCTCGCCGTCTTCTCCAACACAACCATGACTGAAGTTCATGGAAGGACATTTGGAGTGTGGACTCTCCTAACTTGCACTCTTTGCATTGTCTGTGCATTCAACCTTGAGAATAAGCCCATTTATTTGGCGACCTTTTTGTCCTTCATCTATGCTTTGGGGCATTTCTTGACCGAACACTTGATATATCATACCATGTCCATCGCGAATCTCACGACCGTTGGCATCTTTGCGGGGACGTCAATAATATGGATGTTGCTCCAGTGGAACGCACACCAGAGAATTCATCCCAAACATTCTTGA 390 47.69 MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIVCAFNLENKPIYLATFLSFIYALGHFLTEHLIYHTMSIANLTTVGIFAGTSIIWMLLQWNAHQRIHPKHS 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11610153 11612577 - CmoCh01G015020.1 Cmo01g01502 374985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01502 129 PANTHER BNAA08G26030D PROTEIN 1 127 - -
Cmo01g01502 129 Pfam Erg28 like protein 4 112 IPR005352 GO:0016021
Cmo01g01502 129 PANTHER ERGOSTEROL BIOSYNTHETIC PROTEIN 28-RELATED 1 127 IPR005352 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01502 - - - csv:101220572 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01502 Cmo-Chr1:11610153 Cmo09g00603 Cmo-Chr9:3003619 6.34E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g585 . . . . . . . Bma01g02566 . . Cma01g01449 . . . . . . . . . . . . . . . . . . . . Cone4ag1260 Cone7ag0883 . . Lsi04g02314 Csa03g04532 Chy04g00171 . . . Bda11g00818 . . . . . Sed12g1375 Cmo01g01502 . . . . . . Cpe02g00500 Bhi09g02550 Tan01g3898 Cmetu04g0667 . . Mch11g0752 . Cla11g01464 Cam11g1516 Cec11g1555 Cco11g1550 Clacu11g1680 Cmu11g1497 Cre11g1918 . . . Cme04g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012719 1 1 0 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01502 Cmo_Chr01 FPKM 0.886309 1.079983 1.914088 1.522038 2.796161 2.442337 2.533721 2.258307 2.075546 1.777183