Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01505 ATGTCGATTTCGACCTTTTTCGGCTGTAGGATTTCGGTTCCGCCATTGGTGAAACCGTCTGCAAGAAATGCTGCTGCTCCATGTTCCGGTGGGAGTTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAGTCTCAGCCATGGGACATTAAGCGCAAGCCGACTGTGTATCCTCCTCTGCCGAATCTTCCACCGGACTGGACTTTTGTTTCACCAGTCTCTGGCGATGATTTCCAGAAACCGGAGAATTATGCAAAACGCCAAAGACCCCTCGCTTTCTCTTTTGGAATTTCAAGTGCCAAGGGATTTCGGTCATTTCTCCAACTTCTTTTGCACTGCTCGGAGCTCAATAACTGGACGGCATTTCCCACCGGAATTTCCATTGAAGGCCGTTTTCTTCGACCTGGAATCACTGAATACCCCCTGATACTGCGAATTTGTTTTGTAGATGCAATTTGGGTCAGTGTACTTGCTGGAATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGGAGCTTTGTCAAGCCGAATGGGAAAGGAAAGTGGCACAAGCCATTAGGTGGTTCTCGTTCACAAAACCAATCCTTCAAACTCTCTCCTGGTTATGCTGTCTTTCGTGTCCTCTTTCATGTTTCAAGAATTGGCAGTCTAATAGGTGGAGATGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGAAACTGTACATGGAAGTAATGAGAAAATAGTAGTAATTGCAGGCCCTAATCAAGAAACTGAAGTGAACCCTGAGCAGAATAATAAGGAAGACAAGAAAAATTCTGAAGTCGAGGAGAACGGTGACAATATTGCTGAGTGTAAAAAGAAAGAAGATAAAGATTCTCCTCCTTTGGAAGATGGTAAACAGAAGGAAGTTCCACATTTGCAATTGCGGAAGGCCCTCTTTCTTGTATCTGAGAATCAAGCTGGGTGCTTATTGGGAAAGGCTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGCATAAACTTCCTACCTGTGCAGCATCCAGTGATGAGTTAGTCCCTTACTCTGTGCCGCGTGATGTTGGCAATTTTCGTTCCAGTGTTCCTTCTCTTGCTCCTAAACAGTATGAAACCAGCATTCCTGGTCGAATCCAACCTTCTCATGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTAATTGGAAAAGGAGGAGCAATAGTTAAGACTCTTCAGCAAGAGACAAGCTGTGACATCAAAGTTGTTGAAATAAATGGAGAGCCCGAAGCAGTTCAAGATGCTATGTTGCAGATCACTACTCTGCTGAGACATCATTTTTTCCGCCATGCATTTCCATCTGTTAATAGCCCCTCATTTCATAAGCTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCAGCCTCCTTTTCTTCATAGGCCTGGTGCTTCTCTATTGTCTGATAGAAAACCATGGAGCTCCCAGGGACGAGTTGAAGGTGGTGTTGGCTTGCCAGACTTCGCAGGAGCCCATCGTAGAAGAATGGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTCTTCCTAGAAACCTTGTTCCTGTTATTTGTGGAGAGAATGGTGAATGTTTGAGACAGATTCGTCAGGTTTCTGATGCAAAAATTACGATTTCCGAACCAAAGCAAGGAGCAGTTGAAACTCTAGTTATCATTTCTGGAACGCCTGAGCAGACTCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTTATCAGTGAGACCGAGTCTAGTTGA 1914 44.41 MSISTFFGCRISVPPLVKPSARNAAAPCSGGSLVIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDDFQKPENYAKRQRPLAFSFGISSAKGFRSFLQLLLHCSELNNWTAFPTGISIEGRFLRPGITEYPLILRICFVDAIWVSVLAGMSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVEENGDNIAECKKKEDKDSPPLEDGKQKEVPHLQLRKALFLVSENQAGCLLGKAGSVVKQMSSDSGAQIRILPRHKLPTCAASSDELVPYSVPRDVGNFRSSVPSLAPKQYETSIPGRIQPSHEILSFRLLCPSERVGNVIGKGGAIVKTLQQETSCDIKVVEINGEPEAVQDAMLQITTLLRHHFFRHAFPSVNSPSFHKLDALSGIPSLSDLRDDQPPFLHRPGASLLSDRKPWSSQGRVEGGVGLPDFAGAHRRRMAGFGGGNNPAIITSTTVEVVLPRNLVPVICGENGECLRQIRQVSDAKITISEPKQGAVETLVIISGTPEQTHAAQSLIQAFVISETESS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11620244 11627444 + CmoCh01G015050.1 Cmo01g01505 374988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01505 637 Gene3D K Homology domain, type 1 560 633 IPR036612 GO:0003723
Cmo01g01505 637 Gene3D K Homology domain, type 1 217 275 IPR036612 GO:0003723
Cmo01g01505 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 409 475 IPR036612 GO:0003723
Cmo01g01505 637 ProSiteProfiles Type-1 KH domain profile. 414 467 - -
Cmo01g01505 637 MobiDBLite consensus disorder prediction 177 207 - -
Cmo01g01505 637 ProSiteProfiles Type-1 KH domain profile. 324 360 - -
Cmo01g01505 637 Pfam KH domain 219 272 IPR004088 GO:0003723
Cmo01g01505 637 Pfam KH domain 417 467 IPR004088 GO:0003723
Cmo01g01505 637 Pfam KH domain 329 364 IPR004088 GO:0003723
Cmo01g01505 637 Pfam KH domain 564 627 IPR004088 GO:0003723
Cmo01g01505 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 381 452 - -
Cmo01g01505 637 MobiDBLite consensus disorder prediction 263 318 - -
Cmo01g01505 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 319 367 IPR036612 GO:0003723
Cmo01g01505 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 329 377 - -
Cmo01g01505 637 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 172 333 - -
Cmo01g01505 637 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 450 520 - -
Cmo01g01505 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 212 271 IPR036612 GO:0003723
Cmo01g01505 637 Pfam Family of unknown function (DUF5323) 29 87 IPR020526 GO:0003735|GO:0005840|GO:0006412|GO:0009507|GO:0019843
Cmo01g01505 637 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 381 452 - -
Cmo01g01505 637 Gene3D K Homology domain, type 1 413 474 IPR036612 GO:0003723
Cmo01g01505 637 ProSiteProfiles Type-1 KH domain profile. 216 282 - -
Cmo01g01505 637 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 329 377 - -
Cmo01g01505 637 Gene3D K Homology domain, type 1 327 383 IPR036612 GO:0003723
Cmo01g01505 637 SMART kh_6 413 472 IPR004087 GO:0003676
Cmo01g01505 637 SMART kh_6 323 390 IPR004087 GO:0003676
Cmo01g01505 637 SMART kh_6 561 631 IPR004087 GO:0003676
Cmo01g01505 637 SMART kh_6 215 292 IPR004087 GO:0003676
Cmo01g01505 637 MobiDBLite consensus disorder prediction 42 63 - -
Cmo01g01505 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 562 631 IPR036612 GO:0003723
Cmo01g01505 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 172 333 - -
Cmo01g01505 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 450 520 - -
Cmo01g01505 637 MobiDBLite consensus disorder prediction 277 318 - -
Cmo01g01505 637 CDD KH-I 564 627 - -
Cmo01g01505 637 CDD PCBP_like_KH 416 468 - -
Cmo01g01505 637 ProSiteProfiles Type-1 KH domain profile. 562 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01505 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 360.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01505 Cmo09g00601 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01505 Cmo-Chr1:11620244 Cmo19g00500 Cmo-Chr19:5942749 1.60E-13 dispersed
Cmo01g01505 Cmo-Chr1:11620244 Cmo09g00601 Cmo-Chr9:2991375 4.25E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01505 Cmo_Chr01 FPKM 2.288879 2.721378 2.247975 2.072469 10.57949 11.094286 9.241821 1.546315 1.544611 1.239289