Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01507 ATGGTCGGTCGGTTGTTGTTCTTCTTCTTTCTTGTCTTTTTGATTTCTCCGGCGGTCGGGAATGATCAGTCGGGGTTTTTCTCTCTGATGAAACAGACGGTGGTTGGGAATTCTCTGCCGTCTGATTGGGATGGGAAATCGTTCTGTAACTTCACCGGCGTGAGCTGTAATGAAATGGGGTTTGTGGTGGGGATTGATCTTTCAGGTCGGGTGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTGCCGGAATTGAGAGTGCTCCGTCTTGGCCGGAGTGGGTTTCGTGGGACTTTTCCACATGGGATAATGAATTGCTCTGTTTTAGAAGAACTGGACATGACTTTTCTGTATCTAACAGGGACGCTACCGGATTTCTCGCCGTTGAAAAATTTAAGGATTCTCGACTTGTCGTACAACAATTTCACCGGCGACTTTCCGTTGTCGGTTTTCAATTTGACAAATCTCGAGAGGCTGAATTTCAATGAAGATAGTAATTTCAACACGTGGCAGTTGCCGGAGAGTATCTCCGGCTTGACGAAGCTGAAATCAATGGTGTTGACGACATGTATGCTGGAAGGTCGGATTCCGGCGACGATTGGGAACATGACATCGCTCGTTGACCTCGAATTAAGCGGCAATTTCCTCGCCGGAAAAATCCCGAGAGAAATCGGAAATCTGAAGAATTTGAGAGACTTGGAGCTTTATTACAACTTTTTAATCGGCGAAATTCCAGAGGAGCTTGGGAATTTGACAGAACTCGTGGACTTGGACATGTCGGTCAACAAGTTGACTGGGAAGCTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTGGAAGTTCTTCAGCTTTACAACAACAGCTTAACAGGGGAGATTCCAATTTCAATTTCGAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACAGGACAAGTTCCAAGTAATTTGGGTCAATTCTCGCCGATGGTCGTTCTCGACTTGTCGGAAAATGATTTCTCCGGTCGGTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTTCTCGTGTTGCAAAACAAATTCTCCGGTGAAATCCCGCCGTCGTACGGTAAATGCCAGTCACTTTTACGGTTTCGTGTCAGTTCCAATTTATTAACCGGTTCGGTGCCGGAGGGGCTTCTGGGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTAACCGGCGAGATTCCGAATTCTTTTGTGAAAGCTAGAAATCTCTCCGAGTTGTTCATGCAGAGTAATAAAATTTCCGGCGTGTTGCCGCCGGAAATTTCTGAAGCGACCAATTTGGTTAAGATTGATCTCAGCTACAATCTCTTGTCGGGCCCGATTTCTTCCGAAATTGGGAATCTCCGGCGGCTTAATTTGTTGCTTTTACAAGGAAATCAGCTGAATTCTTCAATACCCACTTCACTTTCTCAGCTGAAATCTCTGAATGTTCTTGATTTATCCGACAATCATTTGACCGGAAACATCCCGGAAAGCCTCTGCGAGTTGCTGCCGAATTCAATCAATTTCTCAAACAATCAACTCACCGGTCCGATTCCTCTGTCTCTGATCAAAGGCGGGCTCGCCGAAAGCTTCTCCGGCAACCCAGGACTCTGCGTTTCGGTTTATTTAGATTCCTCCGATCACAAATTCCCAATTTGTCCACAAAACTACAACAAAAAGCGGCTGAATTCCATCTGGGCAATCGGAATATCGGCGTTTATAATCTTCATCGGCGCTGCTCTGTATCTACGACGGCGATTCAGCAGAGAAAAATCAGTAATGGAACAGGACGAAACACTGTCGTCATCGTTTTTCTCATACGACGTCAAAAGCTTCCACCGAATTAGCTTCGACCCACGAGAGGTAATCGAATCAATGGTCGATAAGAACATCGTCGGCCATGGCGGCTCCGGCACGGTGTACAAAATCGAATTAAACAGCGGCGAAATCGTCGCCGTTAAACGGCTGTGGAGTCGGAAGGGGAAGGATACGACGTCGGATCAAGATCAATTGTATTTGGATAAGGAATTAAAAACAGAGGTGGAGACCTTGGGGAGTATACGGCATAAAAATATAGTTAAATTATATTGCTATTTCTCCAGCTTGGATTGCAGCCTTTTGGTTTATGAGTACATGCCAAATGGCAACCTATGGGACGCCCTCCATAAGGGTTGGGTTCATTTGGAGTGGCCAACGCGGCACCAAATTGCGCTTGGCATAGCGCAGGGCTTGGCTTATCTTCACCATGACTTGTTGCCTTCTATTATCCACAGGGACATTAAGACCACTAATATCTTACTCGACGTCAATTATCACCCAAAAGTTGCAGATTTCGGCATCGCTAAGGTTTTGCAAGCTCGAGCCGGAAAGGATTCCACTACCACCGTCATCGCCGGAACCTATGGCTATCTTGCCCCAGAGTACGCGTATTCGTCAAAAACGACAACGAAGTGCGATGTATATAGCTTTGGGATTGTGTTAATGGAGCTGATAACTGGGAAGAAGCCGGTGGAGGCGGAGTTTGGAGAGAATAAGAATATTATATACTGGGTGTCGAATAAAGTAGACACGAAAGAAGGAGCTATGGAAGTTTTAGACAAGAGAGTTTCTGCGTCGTTTAAAGATGAAATGATTCAAGTTTTGAGGATTGCAATTCGTTGCACGTATAAGAATCCTGCCCTTCGACCTACCATGAAGGAAGTGGCTCAGTTGTTGATTGAAGCCGACCCTTGCAAATTCGATTCTCAAAATAACAAATGCTCGAAACACGCCACCGCCAAAATCAAGAACAACCCATTTGAGCTATGA 2853 45.29 MVGRLLFFFFLVFLISPAVGNDQSGFFSLMKQTVVGNSLPSDWDGKSFCNFTGVSCNEMGFVVGIDLSGRVVSGRFPADVCSYLPELRVLRLGRSGFRGTFPHGIMNCSVLEELDMTFLYLTGTLPDFSPLKNLRILDLSYNNFTGDFPLSVFNLTNLERLNFNEDSNFNTWQLPESISGLTKLKSMVLTTCMLEGRIPATIGNMTSLVDLELSGNFLAGKIPREIGNLKNLRDLELYYNFLIGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENDFSGRLPTDVCGEGKLMYFLVLQNKFSGEIPPSYGKCQSLLRFRVSSNLLTGSVPEGLLGLPHVSIIDFGNNNLTGEIPNSFVKARNLSELFMQSNKISGVLPPEISEATNLVKIDLSYNLLSGPISSEIGNLRRLNLLLLQGNQLNSSIPTSLSQLKSLNVLDLSDNHLTGNIPESLCELLPNSINFSNNQLTGPIPLSLIKGGLAESFSGNPGLCVSVYLDSSDHKFPICPQNYNKKRLNSIWAIGISAFIIFIGAALYLRRRFSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREVIESMVDKNIVGHGGSGTVYKIELNSGEIVAVKRLWSRKGKDTTSDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWVHLEWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKTTTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSASFKDEMIQVLRIAIRCTYKNPALRPTMKEVAQLLIEADPCKFDSQNNKCSKHATAKIKNNPFEL 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11636258 11639682 - CmoCh01G015070.1 Cmo01g01507 374990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01507 950 SMART LRR_typ_2 131 155 IPR003591 -
Cmo01g01507 950 SMART LRR_typ_2 493 517 IPR003591 -
Cmo01g01507 950 SMART LRR_typ_2 277 301 IPR003591 -
Cmo01g01507 950 SMART LRR_typ_2 229 253 IPR003591 -
Cmo01g01507 950 Gene3D Transferase(Phosphotransferase) domain 1 727 945 - -
Cmo01g01507 950 Pfam Protein kinase domain 643 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01507 950 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Cmo01g01507 950 SMART serkin_6 641 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01507 950 SUPERFAMILY RNI-like 65 340 - -
Cmo01g01507 950 SUPERFAMILY L domain-like 259 559 - -
Cmo01g01507 950 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 940 - -
Cmo01g01507 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Cmo01g01507 950 SUPERFAMILY Protein kinase-like (PK-like) 628 920 IPR011009 -
Cmo01g01507 950 ProSiteProfiles Protein kinase domain profile. 641 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01507 950 Pfam Leucine Rich Repeat 133 152 IPR001611 GO:0005515
Cmo01g01507 950 Gene3D Ribonuclease Inhibitor 355 562 IPR032675 -
Cmo01g01507 950 Gene3D Ribonuclease Inhibitor 65 354 IPR032675 -
Cmo01g01507 950 Gene3D Phosphorylase Kinase; domain 1 625 726 - -
Cmo01g01507 950 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 5 940 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01507 Cmo05g00597 CCT
Cmo01g01507 Cmo12g00184 CCT
Cmo01g01507 Cmo09g00599 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01507 Cmo-Chr1:11636258 Cmo09g00600 Cmo-Chr9:2978743 0 dispersed
Cmo01g01507 Cmo-Chr1:11636258 Cmo01g01508 Cmo-Chr1:11643414 0 tandem
Cmo01g01507 Cmo-Chr1:11636258 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74059 PF00069 Pkinase 9.30E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01507 - - csv:101222864 1679.46