Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01508 ATGTCGTCTCTACATTTCCTCTGTTTTCTCTCTCTCTTGAGCTTCCTCACCGGAATCAAGTCCGACGAGCGTCAAATCCTAACCGAACTCCAAATCAATCTCCAAAGCTCGAACACCAAGGTGTTCGAAAATTGGGGACACGAAACCCACATCTGCAACTTCACCGGAATCACCTGTAATTCCGACGAGTTCGTCACCGGAATTGACCTCTCCAAAAGGGGTTTATCAGGGGTTCTTCCATTTGATGCCATTTGTGAACTGAAATCATTGGAGAAGCTAGCTTTTGGGTCGAATTCCTTGCACGGCGGAGCAACGGAGAGCTTGAACAAGTGTGTCAAATTGAAATATTTGGATCTGGGTATCAATTCCTTCTCTGGGTCCTTCCCCGACATACATTCTTTGACGGAATTGCAGTATCTGTACTTGAATTTAAGTGGGTTTTCCGGGAAGTTCCCATGGAAATCCGTCGAGAATTTTACTGGGCTGATCGAGTTGAGCCTTGGCGATAACGCTTTCGACAACGCCACATTTCCGGTGGAGGTCACAGCTTTGAAGAAGCTCACATGGCTTTACTTGTCGAATTGCAGCTTAACAGGGGAGATTCCGAGGGCTATTGGGAATCTTACAGAGCTTCGGAGTTTGGAATTCTCGGAAAATTACATCACCGGGGGAATTCCGGCGGAGATTGTGAATTTGCAGAATCTATGGCAGTTGGAGTTTTACGGTAATCAATTGACGGGGAAACTTCCGGCGGGGTTGAGAAACCTAACCCGGCTGAAGAATTTCGATGGTTCGATGAATTTTATAAGTGGGGATTTGTCGGAGGTGAGGTTTTTGACGAATTTGGTTTCTCTGCAACTGTTTGATAATGAAATCTCCGGCGGTGTTCCGGCTGAGCTTGGTGAGTTCAAGTCGCTGGTGGATCTTTCGCTTTATAGTAATCGGCTTACTGGTCCGCTGCCGCAATCGATTGGTTCTTGGTCGGATTTTGATTACATTGATGTATCTGAAAATTTCTTGTCGGGATCTATTCCGCCGGATATGTGTAAGAAAGGGACGATGAAGAAGCTTCTCATTCTTCAGAACAATTTCTCCGGCGAGATTCCGGCGACTTACGGTAATTGCTCAACTTTAACGCGATTTAGAGTTAGTGAGAACTCGCTCACCGGTGTTGTTCCGTCTGGGATTTGGGCATTGCCGAATGTGAATATAATTGATCTTGCATCAAATCAATTGGAAGGTTCGATCACTTCTGATATTGGGAAGGCGGTGGCTCTCTCGGAATTACGCGTCGAAAATAATCGATTATCTGGTCGTTTGCCGTTGGAGATTTCGCAAGCGAAATCTCTTGCTAAAGTTAGTTTGAGCAATAATGAGTTTTCTGGTGAACTTCCGGCAACTATTGGTGACTTGAAGCATCTCGACAGCCTCGAATTGCATAGCAATAGATTCTATGGTTTGATTCCGGAGACGATTGGCTCGTGTGATTCCTTGTCTATCGTCAATTTTGCGGAAAATTTGTTCTCAGGAAAAATCCCTTCGTCTCTAGGGTTTGTTGCGGTTCTAAATTCTCTGAATCTCTCCAATAACGCCCTCTCTGGTGAAATCCCCTCGACGTTTTCGCATCTGAAGTTGAGTGTTCTCGATCTTTCCAATAATCAGTTAACTGGTCCAGTGCCAGAATTGCTTGTGAATGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGTAGTGATGTTGATGGCGTTTTACAGCGATGTTCACAGAGATCCGATGATTCCAAGCACGTTCGTACATTTGTTATCTGTTTCGCCGTTGGATTACTTCTTCTCAGCATAACAGTATGGTGCTTCATAACGTTGAAAAAGAGTGAAAAACACAGAGATTGGTCACTTAAAGAGGAATCGTGGGACCTAAAATCCTTCCACGTAATGTCATTTACAGAGGACGAGATTCTCAATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACCGTCGGGAACGGGAAAGAGTTCGCAGTGAAGCATATATGGAACACCAATCCGTACGACGACAAGAGGAGGAACCGAAGCTCGTCCCCCATTCTCCAAAAACAAAGAACGAAATCCTCAGAATTCGATTCAGAGGTGAAGACTCTAAGCTCAATCCGACATGTAAACGTGGTGAAGCTCTACTGCAGCATTACAAGTGAGGTTTCAAACCTATTAGTATACGAATATATGCCTAACGGAAGCTTATGGGACAGACTCCACACATCCAGAAAAATGGAATTGGATTGGGAAACAAGATACCAAATCGCCATCGGAGCAGCAAAAGGGTTAGAGTATCTTCATCACGGCTGCGACCGACCAGTGATCCACCGAGACGTTAAGGCCAGTAACATACTCTTGGACGAATTTCTAAAGCCAAGAATTGCAGATTTCGGCCTAGCCAAAATGCTTCAAGCTAGTGGGTTCACCGAGAGCTCCCACGTCATCGCAGGCACCCCAGGCTACATCGCTCCAGAATACGGGTATACGTACAAAGTCGACGAGAAGAGCGACGTGTACAGTTTCGGGGTCGTGTTGTTAGAGTTGGTGAGCGGGAAGAAGGCGATCGAGGCGGAGTTCGGGGAGAACAAGGACATAGTGGAATGGGTATCAAACAATTTGAAGACAAGAGAAAGGGTATTGAGCTTGGTAGACTCAAGGCTCGGAGACATGTTTAAAGAGGACGCCATAAAGGTCCTGAGAATTGGGATTTTGTGCACAGCCAGGGCTCCGACATCGAGACCGACAATGAGAAGCGTGGTCCAAATGCTACAAGAAGCCCAACCTTGTGGGTTAGTTGGAATTACAATTAGCAAAAAATGA 2886 45.63 MSSLHFLCFLSLLSFLTGIKSDERQILTELQINLQSSNTKVFENWGHETHICNFTGITCNSDEFVTGIDLSKRGLSGVLPFDAICELKSLEKLAFGSNSLHGGATESLNKCVKLKYLDLGINSFSGSFPDIHSLTELQYLYLNLSGFSGKFPWKSVENFTGLIELSLGDNAFDNATFPVEVTALKKLTWLYLSNCSLTGEIPRAIGNLTELRSLEFSENYITGGIPAEIVNLQNLWQLEFYGNQLTGKLPAGLRNLTRLKNFDGSMNFISGDLSEVRFLTNLVSLQLFDNEISGGVPAELGEFKSLVDLSLYSNRLTGPLPQSIGSWSDFDYIDVSENFLSGSIPPDMCKKGTMKKLLILQNNFSGEIPATYGNCSTLTRFRVSENSLTGVVPSGIWALPNVNIIDLASNQLEGSITSDIGKAVALSELRVENNRLSGRLPLEISQAKSLAKVSLSNNEFSGELPATIGDLKHLDSLELHSNRFYGLIPETIGSCDSLSIVNFAENLFSGKIPSSLGFVAVLNSLNLSNNALSGEIPSTFSHLKLSVLDLSNNQLTGPVPELLVNGAYKESFAGNPGLCSDVDGVLQRCSQRSDDSKHVRTFVICFAVGLLLLSITVWCFITLKKSEKHRDWSLKEESWDLKSFHVMSFTEDEILNSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYDDKRRNRSSSPILQKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSNLLVYEYMPNGSLWDRLHTSRKMELDWETRYQIAIGAAKGLEYLHHGCDRPVIHRDVKASNILLDEFLKPRIADFGLAKMLQASGFTESSHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLLELVSGKKAIEAEFGENKDIVEWVSNNLKTRERVLSLVDSRLGDMFKEDAIKVLRIGILCTARAPTSRPTMRSVVQMLQEAQPCGLVGITISKK 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11643414 11646824 - CmoCh01G015080.1 Cmo01g01508 374991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01508 961 Gene3D Transferase(Phosphotransferase) domain 1 752 951 - -
Cmo01g01508 961 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
Cmo01g01508 961 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Cmo01g01508 961 SUPERFAMILY Protein kinase-like (PK-like) 649 945 IPR011009 -
Cmo01g01508 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 953 - -
Cmo01g01508 961 Gene3D Ribonuclease Inhibitor 20 174 IPR032675 -
Cmo01g01508 961 Gene3D Ribonuclease Inhibitor 352 598 IPR032675 -
Cmo01g01508 961 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 5 953 - -
Cmo01g01508 961 SUPERFAMILY L domain-like 158 412 - -
Cmo01g01508 961 SUPERFAMILY L domain-like 45 174 - -
Cmo01g01508 961 MobiDBLite consensus disorder prediction 695 714 - -
Cmo01g01508 961 Pfam Protein kinase domain 660 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01508 961 SMART serkin_6 658 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01508 961 Gene3D Ribonuclease Inhibitor 277 351 IPR032675 -
Cmo01g01508 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Cmo01g01508 961 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Cmo01g01508 961 SUPERFAMILY L domain-like 384 563 - -
Cmo01g01508 961 Gene3D Ribonuclease Inhibitor 175 276 IPR032675 -
Cmo01g01508 961 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Cmo01g01508 961 ProSiteProfiles Protein kinase domain profile. 658 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01508 Cmo-Chr1:11643414 Cmo09g00599 Cmo-Chr9:2974990 0 dispersed
Cmo01g01507 Cmo-Chr1:11636258 Cmo01g01508 Cmo-Chr1:11643414 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74060 PF00069 Pkinase 1.20E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01508 - - csv:101223100 1455.27