Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01510 ATGGCTGGAGTTCTCAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAAATTTCATCTTTGAAGCAGGTAAAGGATATTATACTGTCTATCGAGCCATCTTTCGCTGCAGAGCTTTACTCCTACTTGGTCGAGCTTCAGTCCTCCCCCGAGAGCTTACTACGTAAATTGTTGATTGAGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTAAAGGATGAAGACTCTGTTGTAGCAGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTACTTTAAGAGAGATGACATTGCAGTTCCATCGGCGGGGTAAAGTTGAGAGATGGCTTGAAGAAATGTGGATGAGAATGTTGAAGTTTAAAGATGATGTTTTGGCAATTGCTATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCTGACACAAATGATCCACAAAAAGCTATCTCAGAAGGAAATGGGGATGTTTTTAACATTTCATGGCTAGCTGGTGGTTTTTCTATTTTGGATCCAGTCGGGTTAATGTCAGAAGCTAGTAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCGGGTACATACACAGTAACAGTTATTGGTGGGGGCCTCAAAACTTTAGCACATAGCAGTGACCTCTATTTTGCCCTTGTCATTACTATCTTGAAAATTGTGAAGGGACAATTGAAGCCTGGATCAGAAAATGGAGTAGCAAAGCTAGATGGTGTTAAACTGCAAAATTGTTTGGGTACTTCGGAGCACCAGTGGCCAGGGATAGGAATGGACAACTGGTGCAATGATTACCTAATTTCCAAACCCAACTTAGAGAATGTTGACGATCTATCTAACGGTATAACAAAAATCTTAACTGAATTTCAGAAAACCAATGTCATATTTTGTACTGCTGTTGCAACAATTAAGTTATGTCGAAGTATTGCAAAGATTGAAAATGAAATTTCATTAGCATGCCAATCGATTTCAGAACTATGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTCACATTCTATCGGCACTGCTGGAATTGGTTCCAAGTTTTGAGATGGTAAGGGGGCGTCATGCTGCCAGCATTCAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCAGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAGGTTATCAGGCAAGTGGACAAAATGGTGAAGGCTGCAGATCGAGCTTCGCGTGATGCTTGGCCGAGCAAGGATGATCAATCATCAATTCAGCATAATGCATCAGTGGATCTAACTAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTTCCAATGGTCGTGAGGTTTCCAAGCAAAGTCGTTTTGGTCCAGACGTTCACCTAATCTCCCCAAATCAAAAAGATGGTTCTCTGCAGAATGCCGTCTCTAATGGGACATCTGTTCCTACGTTAGATGTTGAATTAAGTCCAGCAGAGCAGATGATTGCTATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTCTGATTTCAAATATTCATCCGGACTTGTTAGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCATCCCCTCCTTTAACTAGGCATGGGGACTTGCCTGTAACTCGTCAAGGAAGTAGTCATGTGAAGGTTCTGGCACCATCAGCCCCATTAAGTAATGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTTTTCTTTGGCCACCTCAGCTGGTTCAACTTTTGCTGAGTCTACTGTCAATAGTCTCCCTGTCGATTCTAAACGCGATCCAAGAAGGGATCCCCGTCGGCTTGATCCTCGCCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGAAAGTTCAAATATATCTGATATTGACAACTCCATATCTTTGGGAAAATCTGCTTCAGTTCCTGTTACTGCAACGATCGAGAATTCCTTGGTTTCTCCTATAGCAAAAACAAGAGTTGAAGAAAAAATCGTAGAGACCCCATTCGACCTTGGAACAGACCAATTAACCCCCAAATCAAATTCTCCTGATAGAGCCAAGAAAGTCGAAACTATATTAGAAATTAGTGCCCCTCTGGATCCCATGCCTTCTGCTGTTGGAAAAGCTGATGATGGTTTAGTGGCAGTTAATTTGCTCGATGACTCAGTGCCAAAGAGGGATGATACACCATCTTCCATGGAATATGATCAGTATTCTCCATCAGTTACAAATGCAGCTGCATCTGAAGATACCTGCGAGGAATTGCCTCTGCTCCCACCATACGTTGACTTGACTCCAGAACAGCAAATAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTCCACTGGAGCAGATTGCAATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGATGCTGACGATGATATTGTTCGAATGTTGGAAAAGCAAGTCGCTATTGATTACCAACAGCAAAAGGGGCACGAGCTTGCTTTGCATGTCTTATATCACCTACGTTCACTTGATATTCTGGATTCAGTTGAAAGCTCTTCTTCTGCTGTTTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCGCTGCTAGATTCTTTTCCAGCTTCAGATAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCACTTTTGCCCAACTCTACATTGGATCTATTACGTAACCTTTGCTTTTGTGATAATGATGACAACTACGGGAATGATACTCCTGATATTGACCGTGTCACTCAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGGCCATATAGTCGGCAGGCTTGCTTAGATATTGCTCTAAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATGGGATTGAGCAGCATGCAACAAACATGTTCCTGTCTGCAGTAGACGATGGAGATAGGACAGATGTAGTGCCTTCACCATGTGTATCAATTGAACAAAGAGCTGGAGCAGAGGGGGAGAGTCAGGAAACATCCGTCTGCGGTTCTCAAGTGTCAGATCCTGGAACCTCAGAAAACGATTCCATGAGGAGTTCACAACCTACAGTTCGTGGCAGTTCAACCTCGTCACTTTCAGAAGCCGAAAGACATATTTCTCTTCTTTTTGCTTTATGCGTGAAGAAACCTCGTCTTCTTCAGTTTGTATTTGATGCTTATGGACGGGCTTCTAGATCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCTTAGGGTCATCTGATTCTGAATTGCTTAGAATAATATCAGATCCTCCTCAAGGAAGTGAACATCTTTTAGCACTGGTACTACAGGTGCTAACTCGAGAGACAACGCCTTCTTCTGATCTGATCGCAACTGTTAAACATTTATATGAAACTAAACTCAAGGACGTGACAATTCTCATCCCAATGTTGCCCTCACTTTCCAAAAATGAGGTTTTACCTATTTTTCCTCGATTGGTGGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACACCTGTTGAAGTATTGATTGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGGGCCACATGGTTGATTTTGTTATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGAATGCCAAAACTGTGGTTTGGTTTTTTGAAATGTGCATTTCAGACGCAGCCTCATTCCTTTCGAGTACTATTACAGTTGCCACCGCCACAACTTGAAAATGCTTTGAACAAATATGCTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGATGCTCGTAGTTCTGGGTCTTGAAAATGAAAGGCATTTGTAG 4224 42.19 MAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILSIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSVVAGQSIISGQKLFCGTLREMTLQFHRRGKVERWLEEMWMRMLKFKDDVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDVFNISWLAGGFSILDPVGLMSEASRMLGILLNLLQTSSVPGTYTVTVIGGGLKTLAHSSDLYFALVITILKIVKGQLKPGSENGVAKLDGVKLQNCLGTSEHQWPGIGMDNWCNDYLISKPNLENVDDLSNGITKILTEFQKTNVIFCTAVATIKLCRSIAKIENEISLACQSISELCLAAIARKRPVHYGHILSALLELVPSFEMVRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDAWPSKDDQSSIQHNASVDLTRKRPRLLDDEELSNGREVSKQSRFGPDVHLISPNQKDGSLQNAVSNGTSVPTLDVELSPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVTRQGSSHVKVLAPSAPLSNVQTSVATAQVPFSLATSAGSTFAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEESSNISDIDNSISLGKSASVPVTATIENSLVSPIAKTRVEEKIVETPFDLGTDQLTPKSNSPDRAKKVETILEISAPLDPMPSAVGKADDGLVAVNLLDDSVPKRDDTPSSMEYDQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQITVRNLAAEKIFDSCKNSTGADCNQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHLRSLDILDSVESSSSAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPLLPNSTLDLLRNLCFCDNDDNYGNDTPDIDRVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDGIEQHATNMFLSAVDDGDRTDVVPSPCVSIEQRAGAEGESQETSVCGSQVSDPGTSENDSMRSSQPTVRGSSTSSLSEAERHISLLFALCVKKPRLLQFVFDAYGRASRSVKEAVHEHIPNLITALGSSDSELLRIISDPPQGSEHLLALVLQVLTRETTPSSDLIATVKHLYETKLKDVTILIPMLPSLSKNEVLPIFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALGHMVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYANLKGPLAAYASQPSTKSTLSRPMLVVLGLENERHL 1407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11658415 11679767 - CmoCh01G015100.1 Cmo01g01510 374993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 645 694 - -
Cmo01g01510 1407 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 260 - -
Cmo01g01510 1407 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 368 1406 - -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 677 694 - -
Cmo01g01510 1407 Pfam Symplekin tight junction protein C terminal 1316 1370 IPR022075 -
Cmo01g01510 1407 Pfam Symplekin tight junction protein C terminal 1216 1317 IPR022075 -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 482 501 - -
Cmo01g01510 1407 Pfam Symplekin/PTA1 N-terminal 320 445 IPR032460 -
Cmo01g01510 1407 Pfam Symplekin/PTA1 N-terminal 96 255 IPR032460 -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 655 670 - -
Cmo01g01510 1407 SUPERFAMILY ARM repeat 16 1034 IPR016024 -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 459 531 - -
Cmo01g01510 1407 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 368 1406 - -
Cmo01g01510 1407 Gene3D - 2 466 IPR011989 -
Cmo01g01510 1407 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 260 - -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 1073 1112 - -
Cmo01g01510 1407 MobiDBLite consensus disorder prediction 1070 1112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01510 K06100 SYMPK; symplekin - csv:101202828 1709.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01510 Cmo-Chr1:11658415 Cmo03g00360 Cmo-Chr3:4572948 2.93E-28 dispersed
Cmo01g01510 Cmo-Chr1:11658415 Cmo09g00597 Cmo-Chr9:2946885 7.28E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01510 Cmo_Chr01 FPKM 56.914875 58.405098 69.298935 67.366798 26.401939 29.830126 24.327047 69.151337 66.293709 71.683998