Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01513 ATGCCCACTGAAATTAACGACCTAATCTCCACTGCAAATGCCTGGAATTTTGATTGCTCTGATTCTTCCTCTTTGCCCTTTTCTTTACCTATTGACCACCAGGATTTTGGCTATCTTCTCGCCGGCGAAGACGACTATTCTTTTTCCGGCGGCCAGTTCACGGCGGCTCCGAGTACCGGCGATTCGATGTCGTACACTACGTTCGAGACTACGCCGGGGGGTTTCGGCAGGTGTCCGGTTATGGAAGAGGAGGATGAGATTCCGAATCTTGAAGTTCTTGGTAGTTGTAAAATGGAGCCGGCTTATTCTCCTGAAATTGCTCCGGTTTTCAACGCCGGTGGCACGTGCGATTTTGGGCAAAAGATCGTTGGTTCGGCGAGTAAGAAGCTTCAGGGGAAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAAAGGCTTAATGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATTCGATTGATTACGTGAAGGAACTGCTCGAGAAAATCAACCATTTGCAAAGGGAGATTGAAATGGCGAACCCGAGTAAATTGGAGTCTACTGGGATTTTGAGAGCTGAGAATCCGAGTGAATATTTGGTCAGAAATGCACCTAAGTTTAATGTGGAAAGGAGAGAAGGTGACACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGCTTGTTGTTATCTACAGTGCACACTCTTGAAGCTTTAGGACTTGATATTCAGCAATGTGTCATTAGCTGCTTCAATGACTTCGCAATTCAAGCCTCTTGTTCCGAGGCACCTCGAGCATTACACTATGGTTCGATTGACTTAAAAAAATTAGGTTCTTCACGTAGATTGGGAACGGAGCGGAGACCGGTTGAGGAAGTAAAACAAGAATTATTTGAGAATGCTGGATATGGAGGAAGATGTTTGTAG 972 47.02 MPTEINDLISTANAWNFDCSDSSSLPFSLPIDHQDFGYLLAGEDDYSFSGGQFTAAPSTGDSMSYTTFETTPGGFGRCPVMEEEDEIPNLEVLGSCKMEPAYSPEIAPVFNAGGTCDFGQKIVGSASKKLQGKPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADSIDYVKELLEKINHLQREIEMANPSKLESTGILRAENPSEYLVRNAPKFNVERREGDTRIEICCAAKPGLLLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEAPRALHYGSIDLKKLGSSRRLGTERRPVEEVKQELFENAGYGGRCL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11693656 11695357 - CmoCh01G015130.1 Cmo01g01513 374996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01513 323 Gene3D - 125 197 IPR036638 GO:0046983
Cmo01g01513 323 SMART finulus 138 187 IPR011598 GO:0046983
Cmo01g01513 323 PANTHER - 51 323 - -
Cmo01g01513 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 198 IPR036638 GO:0046983
Cmo01g01513 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Cmo01g01513 323 CDD ACT_UUR-ACR-like 231 272 - -
Cmo01g01513 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 51 323 - -
Cmo01g01513 323 Coils Coil 171 191 - -
Cmo01g01513 323 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01513 Cmo05g00589 CCT
Cmo01g01513 Cmo09g00594 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01513 Cmo-Chr1:11693656 Cmo12g00135 Cmo-Chr12:844845 2.29E-84 dispersed
Cmo01g01513 Cmo-Chr1:11693656 Cmo09g00594 Cmo-Chr9:2937102 7.84E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9119 PF00010 HLH 8.10E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01513 - - cmax:111480299 569.311