Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01520 ATGGGATTCTTCGGCTCTTCAGTCTCCCCAAAAGTGGACATGGGTGTAGGCCAGGATGTTGAGAGAACAGGGATTTACTGGCAAAGGGAAGCAGCAATGTTACGGCAACAACTGCAGAGCTTACAAGAAAATCATCGGCAGATGATGGGTGAAGAGTTGACTGGTCTGAGTGTCAAAGATCTACAGAATCTAGAAAACCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAGAAGACAGTTTCCTACTTTGAGCAGGATCAAATCTTAATGGATGAGATACAAGAACTAAACAGAAAGGGAAACCTAATTCACCAAGGCAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAATCTGGAATTATACCAAAAGGTCTATGGAACAAAGGATGCCAAGGGGGCAAGCAGTCTTACAAATGGCCTGGGTGTGGGAGAGGATGCAGGTATACCTATCAGCCTTCAACTCAGCCAACCACAACAACAAAACCTTGAGGCACCAGAAAAAGCAACAAAACTGGGGTACAATTGCGACAAAATGCATAAATGTTCAATAATGCGTACAAATGAACTTTTCCAAAGTCACTATTCCAATCTTGTTCTTTTGATGGTTGCAGCAGACTACAACGACGCTAGCAAAAAGAGACCTTACACCAACCAGGAAGATGTTACTCATTTTGCATCAAGAAAACGGTGTGAGGCTGCAAATTATCTTTCAATCAACGAATTGTGGTAG 744 42.2 MGFFGSSVSPKVDMGVGQDVERTGIYWQREAAMLRQQLQSLQENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKTVSYFEQDQILMDEIQELNRKGNLIHQGNMELYKKVNLIRQENLELYQKVYGTKDAKGASSLTNGLGVGEDAGIPISLQLSQPQQQNLEAPEKATKLGYNCDKMHKCSIMRTNELFQSHYSNLVLLMVAADYNDASKKRPYTNQEDVTHFASRKRCEAANYLSINELW 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11729875 11731449 - CmoCh01G015200.1 Cmo01g01520 375003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01520 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 26 176 - -
Cmo01g01520 247 Coils Coil 31 51 - -
Cmo01g01520 247 Pfam K-box region 26 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g01520 247 ProSiteProfiles K-box domain profile. 24 121 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g01520 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01520 K09264 K09264; MADS-box transcription factor, plant - csv:101203545 231.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01520 Cmo09g00589 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01520 Cmo-Chr1:11729875 Cmo16g00301 Cmo-Chr16:1370498 2.66E-26 dispersed
Cmo01g01520 Cmo-Chr1:11729875 Cmo09g00589 Cmo-Chr9:2898282 8.52E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g548 . . . . Bpe02g00148 . . . . . Cma01g01466 Cma09g00600 . . . Cpe06g00463 . . . . . . . . . . . . . . . Cone4ag1281 . . Cone20ag0564 Lsi04g02291 Csa03g04509 Chy04g00194 . . . . . Bpe02g01163 Bpe14g00493 . Bma02g00105 . Cmo01g01520 Cmo09g00589 . . . Car09g00532 . Cpe02g00486 Bhi09g02527 . . . . . . Cla05g02127 Cam05g2281 Cec05g2304 Cco05g2345 Clacu05g2278 Cmu05g2141 Cre05g2263 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01520 Cmo_Chr01 FPKM 1.135593 1.217569 2.533274 3.445881 8.61224 6.354189 10.03161 4.247808 4.356256 4.715322