Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01524 ATGTATCAGATCCACCCCGCCAACCAATCGCGCCACTTCCGTACTTGTCCAAATTCTAATCTTCGGCGTCGAGCAATTTCTGTTCGTTCTTCCGATTCTTGTTTCTCAAGAAATTTCAGAATCGAAGGTCTCACAATGTCTTCCCGGGGAGTGCGATTGCAGATACGAGATCATCATGTGGTAGTAGATAATGGAATACTGCAACTAACTCTCTCAAAACCAGACGGAATTATCACTGGTATACGTTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGTATTGGGATATTGTTTGGAATTCTCCAGGAAGCCAGGGGATATTTGACGTGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTACAAGGATGTGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTCTGAATATCGACAAGAGGTTCATAGTTCTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGATAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGTTTATCTGGAAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCAATCCCAAGAACCCTGAACACAGGGATGAGGTGGATGACAAATACCAATACTCATGTCAAAATAAAGACTTAAAGGTCCATGGATGGATAAGCACCAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGCGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCTGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAACTCCACTAAAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACGATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAGCCGAGACTATCTTCCAGCCGGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGTCGAAGCTATCAATTCTAAGGAGATGATGAACATGTACGCTCTTAAAAGAATTTATTCTTATTTTCAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGTGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCGATCTTGTTTACGAACCTCCAAGAGATGGACCGACACTATGGGAGATAGGCATTCCCGATCGCTCCGCGTCAGAGTTCTACGTTCCTGATCCTAATCCATTGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTACGGGTTGTGGGAGAGGTACGCTGAGTTATACCCGGACGAGGATTTAGTATACACCGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTAATATTTCTTTTGCTATTCGTTACCCATAACCAAAAACAGTCTCCAACGATCGTCATCTTCGATCCTCACAACTTCTTTGTTTCTGTGGCTATGAAGACGAACGATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTCGATCGAGTAGATCGCAAGAATAGGTATATGCTACGAGTCGCAATTGCATCTGCAACTCTTGCTGAATTGCAGATTCGGGTTAATGATCCGAGTTCAAAACGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATGTATGATTATATCCGTCTGGAAGCTCCTTCAACAAACTGA 2196 43.67 MYQIHPANQSRHFRTCPNSNLRRRAISVRSSDSCFSRNFRIEGLTMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIVWNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTNPKNPEHRDEVDDKYQYSCQNKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMAEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDRYMSRDYLPAGGAFVGLSAPGEVGSWQRECKVEAINSKEMMNMYALKRIYSYFQGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPLHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYSKDWFFAQVIFLLLFVTHNQKQSPTIVIFDPHNFFVSVAMKTNDNSHQGTTWKIAFKLDRVDRKNRYMLRVAIASATLAELQIRVNDPSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQGIMYDYIRLEAPSTN 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11750520 11755089 + CmoCh01G015240.1 Cmo01g01524 375007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 37 423 - -
Cmo01g01524 731 Pfam Polysaccharide lyase family 4, domain II 400 494 IPR029413 -
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 442 580 - -
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 442 580 - -
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 603 730 - -
Cmo01g01524 731 SUPERFAMILY Galactose-binding domain-like 505 726 IPR008979 -
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 603 730 - -
Cmo01g01524 731 CDD RGL4_N 59 337 - -
Cmo01g01524 731 Pfam Rhamnogalacturonate lyase family 54 245 IPR010325 -
Cmo01g01524 731 Gene3D - 506 726 - -
Cmo01g01524 731 SUPERFAMILY Galactose mutarotase-like 57 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cmo01g01524 731 SUPERFAMILY Starch-binding domain-like 437 492 IPR013784 GO:0030246
Cmo01g01524 731 Pfam Polysaccharide lyase family 4, domain III 508 725 IPR029411 -
Cmo01g01524 731 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 37 423 - -
Cmo01g01524 731 CDD RGL4_C 510 726 - -
Cmo01g01524 731 CDD RGL4_M 376 498 IPR029413 -
Cmo01g01524 731 Gene3D - 52 349 IPR014718 GO:0030246
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01524 Cmo12g00167 CCT
Cmo01g01524 Cmo09g00585 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01524 Cmo-Chr1:11750520 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo01g01524 Cmo-Chr1:11750520 Cmo01g01525 Cmo-Chr1:11756585 0 tandem
Cmo01g01524 Cmo-Chr1:11750520 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01524 K18195 - csv:101203947 1174.07