Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01524 | ATGTATCAGATCCACCCCGCCAACCAATCGCGCCACTTCCGTACTTGTCCAAATTCTAATCTTCGGCGTCGAGCAATTTCTGTTCGTTCTTCCGATTCTTGTTTCTCAAGAAATTTCAGAATCGAAGGTCTCACAATGTCTTCCCGGGGAGTGCGATTGCAGATACGAGATCATCATGTGGTAGTAGATAATGGAATACTGCAACTAACTCTCTCAAAACCAGACGGAATTATCACTGGTATACGTTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGTATTGGGATATTGTTTGGAATTCTCCAGGAAGCCAGGGGATATTTGACGTGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTACAAGGATGTGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTCTGAATATCGACAAGAGGTTCATAGTTCTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGATAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGTTTATCTGGAAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCAATCCCAAGAACCCTGAACACAGGGATGAGGTGGATGACAAATACCAATACTCATGTCAAAATAAAGACTTAAAGGTCCATGGATGGATAAGCACCAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGCGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCTGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAACTCCACTAAAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACGATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAGCCGAGACTATCTTCCAGCCGGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGTCGAAGCTATCAATTCTAAGGAGATGATGAACATGTACGCTCTTAAAAGAATTTATTCTTATTTTCAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGTGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCGATCTTGTTTACGAACCTCCAAGAGATGGACCGACACTATGGGAGATAGGCATTCCCGATCGCTCCGCGTCAGAGTTCTACGTTCCTGATCCTAATCCATTGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTACGGGTTGTGGGAGAGGTACGCTGAGTTATACCCGGACGAGGATTTAGTATACACCGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTAATATTTCTTTTGCTATTCGTTACCCATAACCAAAAACAGTCTCCAACGATCGTCATCTTCGATCCTCACAACTTCTTTGTTTCTGTGGCTATGAAGACGAACGATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTCGATCGAGTAGATCGCAAGAATAGGTATATGCTACGAGTCGCAATTGCATCTGCAACTCTTGCTGAATTGCAGATTCGGGTTAATGATCCGAGTTCAAAACGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATGTATGATTATATCCGTCTGGAAGCTCCTTCAACAAACTGA | 2196 | 43.67 | MYQIHPANQSRHFRTCPNSNLRRRAISVRSSDSCFSRNFRIEGLTMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIVWNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTNPKNPEHRDEVDDKYQYSCQNKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMAEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDRYMSRDYLPAGGAFVGLSAPGEVGSWQRECKVEAINSKEMMNMYALKRIYSYFQGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPLHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYSKDWFFAQVIFLLLFVTHNQKQSPTIVIFDPHNFFVSVAMKTNDNSHQGTTWKIAFKLDRVDRKNRYMLRVAIASATLAELQIRVNDPSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQGIMYDYIRLEAPSTN | 731 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11750520 | 11755089 | + | CmoCh01G015240.1 | Cmo01g01524 | 375007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 37 | 423 | - | - | |
Cmo01g01524 | 731 | Pfam | Polysaccharide lyase family 4, domain II | 400 | 494 | IPR029413 | - | |
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 442 | 580 | - | - | |
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 442 | 580 | - | - | |
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 603 | 730 | - | - | |
Cmo01g01524 | 731 | SUPERFAMILY | Galactose-binding domain-like | 505 | 726 | IPR008979 | - | |
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 603 | 730 | - | - | |
Cmo01g01524 | 731 | CDD | RGL4_N | 59 | 337 | - | - | |
Cmo01g01524 | 731 | Pfam | Rhamnogalacturonate lyase family | 54 | 245 | IPR010325 | - | |
Cmo01g01524 | 731 | Gene3D | - | 506 | 726 | - | - | |
Cmo01g01524 | 731 | SUPERFAMILY | Galactose mutarotase-like | 57 | 339 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cmo01g01524 | 731 | SUPERFAMILY | Starch-binding domain-like | 437 | 492 | IPR013784 | GO:0030246 | |
Cmo01g01524 | 731 | Pfam | Polysaccharide lyase family 4, domain III | 508 | 725 | IPR029411 | - | |
Cmo01g01524 | 731 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 37 | 423 | - | - | |
Cmo01g01524 | 731 | CDD | RGL4_C | 510 | 726 | - | - | |
Cmo01g01524 | 731 | CDD | RGL4_M | 376 | 498 | IPR029413 | - | |
Cmo01g01524 | 731 | Gene3D | - | 52 | 349 | IPR014718 | GO:0030246 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01524 | Cmo12g00167 | CCT | |
Cmo01g01524 | Cmo09g00585 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01524 | Cmo-Chr1:11750520 | Cmo12g00167 | Cmo-Chr12:1101111 | 0 | dispersed | |
Cmo01g01524 | Cmo-Chr1:11750520 | Cmo01g01525 | Cmo-Chr1:11756585 | 0 | tandem | |
Cmo01g01524 | Cmo-Chr1:11750520 | Cmo09g00585 | Cmo-Chr9:2873512 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01524 | K18195 | - | csv:101203947 | 1174.07 |