Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01525 ATGTCAACAGATTTGAGGGAAATGAAAAAAAGTGCATTTTCAATTTTGTCCGACTCCCTCAAAATATTTTGGCTCTTTTCTTCCCTTTTCTTTTACGTTTACGGACCCTTCATCCCCCCGACGACAAAAGACCCCGCCTTCTCGACCACGCCCGACACCAATGGACACGGCCCCGATGGACACAACCCCGATGGACATAGCCCTGATGGACACAGCCCCAATGCATCAGTGTCTCTGTTGCAACTTCACATCCAAGAACAATATGTTGTGATGGAGAATGAAATAATTGCAGTGACGATATCGAATCCGATGGGATTTGTCACCGGAATACAATACCATGGGATTGAAAACTTGCTTGATGTGACCAATCCTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAACACCGCAGGAGCGAAAGGAACCAAAGGCATGTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATCGTACAAAATGACGAACAGATAGAACTCTCATTCAGCAGAACTTACAATTCATCCTCCGGAGACGACGTAGTTCCTTTGAATGTCGACAAAAGGTTCGTGATACTTCGAAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGACTGGCCAGCGTTTAACATCGACAACACCAGAATCGCATTCAAGCCGCGAAAAGACAAGTTTCGATACATGGTAGTAGCAGATGAGAGACAGAGATTCATGCCTTTACCAGACGATCGGAAGCCACCCCGAGGAGTAGCCCTAGAGTATCCAGAGGCCGTCCTCCTTGTGGATCCTATAGAACCCGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGGTGCGAAAGCAAAGACACTCGGGTTCACGGGTGGATATCCAACGACCCGCCCATTGGCATTTGGCAAATCACAGCCAGCGAGGAGTATCGCTCCGGTGGGCCCCTCAAACAAGTTCTCACCTCCCATGTGGGTCCCACCTCCCTTACGGTTTTCCATAGCGCTCATTACGCAGGAGCGGCTATGGTGATACGGTTTGGAAGTAACGAGGCATGGAAGAAGGTGTACGGCCCTGTCTTTATACATATCAATTCCTTGCCTGAAAAAGAAGATCCACTCAGACTTTGGCAAAATGCTAAAGAACAGATGGCTGCTGAAGTTCAAAGCTGGCCTTACAATTTCCCTGCGTCTAAGGATTTTATCAAAGCAGACCAACGAGGGACTGTCACTGGCACATTGATGATCCATGAGAGATATGTGAGTAATGAATCCATACCTGCAAGTGGTGCATATGTGGGGCTGGCACTTCCCGGGGAACTTGGCTCCTGGCAAACAGAAAGCAAGGGCTACCAATTCTGGAGCAGAGCAGATGAGAATGGACATTTCACTTTGGAAAATGTTCTCAGTGGAAATTATAGTCTTAATGGATGGGTATATAATTTTATCAGCGAGTACCAATATGATGCTTTCATCACTGTAACCCCAGGCAGCGATATCGATGTGGGTGAACTTGTTTTCGAGCCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATTCCAGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAGTCCCAAGTTTATTAATAAACTTTTTGTCAATCATTCAGATAAGTTTAGGCAGTATGGGTTATGGGAAAGATACGCAGAATTATATCCTAAGGAGGACCTAGTTTATACGGTTGACCATAGTGACTACAAAAAAGATTGGTTCTTTGCACAAGTTAACAGGAAGATAGACGACAACAACACATATGTAGGAACTACTTGGAAAATTGAGTTCAAAATTGACAGTCCAGATACACATGGAACATATAAGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGAGTGAATGATGCACAAACAGTTACCCCGTTATTCACAACTGGAGTAATTGGAAAGGACAACACTATAGCTAGACATGGAATTCACGGTCTGTACCGGTTTTACAGTGTCGATATTCCGGGCAAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCGTAGCTACAATTCGTTGCTCTTATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTATCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTGGGAAGAATTAAAATAGTAGCATGCGACTCAAATCACGATGAGAGGAGATGGCCACCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTCTGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGATTCATGACAATTATACAACCCTTCTAGTTGAATGA 2583 44.52 MSTDLREMKKSAFSILSDSLKIFWLFSSLFFYVYGPFIPPTTKDPAFSTTPDTNGHGPDGHNPDGHSPDGHSPNASVSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDVVWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDDVVPLNVDKRFVILRNSSGFYSYAIYEHLKDWPAFNIDNTRIAFKPRKDKFRYMVVADERQRFMPLPDDRKPPRGVALEYPEAVLLVDPIEPEFKGEVDDKYQYGCESKDTRVHGWISNDPPIGIWQITASEEYRSGGPLKQVLTSHVGPTSLTVFHSAHYAGAAMVIRFGSNEAWKKVYGPVFIHINSLPEKEDPLRLWQNAKEQMAAEVQSWPYNFPASKDFIKADQRGTVTGTLMIHERYVSNESIPASGAYVGLALPGELGSWQTESKGYQFWSRADENGHFTLENVLSGNYSLNGWVYNFISEYQYDAFITVTPGSDIDVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPSPKFINKLFVNHSDKFRQYGLWERYAELYPKEDLVYTVDHSDYKKDWFFAQVNRKIDDNNTYVGTTWKIEFKIDSPDTHGTYKLRLALATAHAAELQVRVNDAQTVTPLFTTGVIGKDNTIARHGIHGLYRFYSVDIPGKSKKPEASQTHFQSVATIRCSYLVFRRRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSNHDERRWPPRLCFMLQVWKRFKCDSVKLLSRTLTLPLILIGFQSQIHDNYTTLLVE 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11756585 11765771 + CmoCh01G015250.1 Cmo01g01525 375008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01525 860 CDD RGL4_M 408 507 IPR029413 -
Cmo01g01525 860 Pfam Rhamnogalacturonate lyase family 71 277 IPR010325 -
Cmo01g01525 860 Gene3D - 758 810 IPR009088 GO:0005672|GO:0006367
Cmo01g01525 860 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 73 677 - -
Cmo01g01525 860 SUPERFAMILY Galactose-binding domain-like 514 676 IPR008979 -
Cmo01g01525 860 CDD TFIIA_gamma_N 707 752 IPR015872 GO:0005672|GO:0006367
Cmo01g01525 860 Gene3D - 706 757 IPR009083 GO:0005672|GO:0006367
Cmo01g01525 860 CDD RGL4_N 88 368 - -
Cmo01g01525 860 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 73 677 - -
Cmo01g01525 860 SUPERFAMILY Starch-binding domain-like 405 505 IPR013784 GO:0030246
Cmo01g01525 860 CDD RGL4_C 519 675 - -
Cmo01g01525 860 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 755 804 IPR009088 GO:0005672|GO:0006367
Cmo01g01525 860 Pfam Polysaccharide lyase family 4, domain II 431 503 IPR029413 -
Cmo01g01525 860 Gene3D - 404 504 - -
Cmo01g01525 860 Pfam Transcription initiation factor IIA, gamma subunit 763 804 IPR015871 GO:0005672|GO:0006367
Cmo01g01525 860 Gene3D - 82 359 IPR014718 GO:0030246
Cmo01g01525 860 Gene3D - 515 696 - -
Cmo01g01525 860 MobiDBLite consensus disorder prediction 45 75 - -
Cmo01g01525 860 CDD TFIIA_gamma_C 760 805 IPR015871 GO:0005672|GO:0006367
Cmo01g01525 860 Pfam Polysaccharide lyase family 4, domain III 517 678 IPR029411 -
Cmo01g01525 860 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 707 757 - -
Cmo01g01525 860 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 707 752 IPR015872 GO:0005672|GO:0006367
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01525 Cmo09g00584 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01525 Cmo-Chr1:11756585 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo01g01524 Cmo-Chr1:11750520 Cmo01g01525 Cmo-Chr1:11756585 0 tandem
Cmo01g01525 Cmo-Chr1:11756585 Cmo09g00584 Cmo-Chr9:2871408 4.13E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01525 K18195 - csv:101203789 1007.67