Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01528 ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGATCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTATTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACGGATCATATAGTATCAAAATCTTCTGTTATGACTGAACCAAAGGCTGCCATCATGTCTGCAATAAATTTGCCTAATGGAGAGACAGCACGTGTGTCACATACTGGCAATATTTCCCTTAGCCCTAACCTTCAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGATATCCTTGTGGTCATAAAGGTTACAAGTTGTATGACATGCAATCTCACAAATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCCTGTTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGCCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGATACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTCCAAAGCAGATTACTCTTTGTTTACTAAGAGTAAAGGTACTTCTTTCACTGCAGTTCTAATCTATGTTGATGATATTCTGTTGACAGGCAATGATCTCGAAGAAATTCAATATCTCAAGACTAGTTTACTCCAGAAATTTCTTATCAAAGATTTAGGAAATTTGAAATATTTTCTAGGCATTGAATTTTCTCGATCTAGAAAAGGAATTTTTATGTCTCAAAGGAAGTATGCTCTAGACATCCTTCAAGACACAGGTCTTACAGGAGCACGTCCAGACAAATTTCCTATGGAGCAAAATCTGAAACTTTCTTTAACTGAAGGAGAGAAGTTGAATGATCCAAGTAAATACAGACGGTTGATTGGCAGATTAATATATTTGACCGTCACTAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGCCAATTTATGCATGAACCAAGAAAACCACATTGGGAGGCAGCTCTTCGAGTTCTGAGGTACATCAAAGGCACTCCTGGTCAAGGACTTCTACTGCCATCTGAAAACAATTTAAGATTACAGGCATATTGCGATTCTGACTGGGGTGGTTGTCGAACTTCCAGACGATCTATTTCTGGGTTCTGCATTTTCCTCGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAAACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAGTTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTTTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGGTTTACTCTCCGTTTCTGCTGCTGCTGGAATCTGTATTTCCGTCTTGGTTCCCTTGCCTCGGTCGCTGTGTGCTCCCGGAATAAGCTACTGTACTCTCATTCAGAGGTGA 3618 40.33 MAESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLFPISTLSINSASSNSWILDSGATDHIVSKSSVMTEPKAAIMSAINLPNGETARVSHTGNISLSPNLQLNNVLCVPSFNLNLMSISKLTNNLKCYVTFYPDSCVMQDLATGKMIGSGKQFGGYPCGHKGYKLYDMQSHKFFISRDVKFCEDDFPFSSASQTSTLAPSTPVVPLHDPSYSNIHPPPSIPSPPTPPSPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGANHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQSKADYSLFTKSKGTSFTAVLIYVDDILLTGNDLEEIQYLKTSLLQKFLIKDLGNLKYFLGIEFSRSRKGIFMSQRKYALDILQDTGLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQAGIIKPCYVSTKMQLADVFTKALGRQQFDFLKDKLGLLSVSAAAGICISVLVPLPRSLCAPGISYCTLIQR 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11803674 11808831 + CmoCh01G015280.1 Cmo01g01528 375011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01528 1205 MobiDBLite consensus disorder prediction 298 312 - -
Cmo01g01528 1205 MobiDBLite consensus disorder prediction 285 312 - -
Cmo01g01528 1205 PANTHER GAG-POL-RELATED RETROTRANSPOSON 509 916 - -
Cmo01g01528 1205 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 509 916 - -
Cmo01g01528 1205 SUPERFAMILY Retrovirus zinc finger-like domains 251 293 IPR036875 GO:0003676|GO:0008270
Cmo01g01528 1205 MobiDBLite consensus disorder prediction 523 637 - -
Cmo01g01528 1205 Pfam gag-polypeptide of LTR copia-type 81 226 - -
Cmo01g01528 1205 SUPERFAMILY DNA/RNA polymerases 694 1127 IPR043502 -
Cmo01g01528 1205 MobiDBLite consensus disorder prediction 543 597 - -
Cmo01g01528 1205 CDD RNase_HI_RT_Ty1 1021 1160 - -
Cmo01g01528 1205 Pfam gag-polypeptide of LTR copia-type 23 70 IPR029472 -
Cmo01g01528 1205 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 695 936 IPR013103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01528 Cmo-Chr1:11803674 Cmo13g00768 Cmo-Chr13:7434032 0 dispersed
Cmo06g00455 Cmo-Chr6:2170667 Cmo01g01528 Cmo-Chr1:11803674 2.33E-106 dispersed
Cmo15g01167 Cmo-Chr15:8134684 Cmo01g01528 Cmo-Chr1:11803674 2.67E-110 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01528 - - rcn:112199378 827.394