Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01531 ATGGACGGCAGCGGAAACGAACTAATTTCCGAAGTGAAATTTTCGTCCGTGGTTCCGGCGAAGGCGACCGGCGAGAATAAGGTCCATGAACTTTCGGCGATCGATCTTGCGATGAAACTTCATTACATTCGCGGCGTTTATTTCTTCAGGCCGAGCGAAGAGGTGAGAAATTTGACGATTTATGACCTAAAGAAACCTATGTTTCCGTTGCTGGAGATATACTATGTCGTTTCGGGGAGGATTCGGAGGAGGATCGAAGATCGCGATCGGCCGTTTATCAAGTGTAATGATAGCGGAGTGAGAATCGTTGAAGTGGAGTGCGAAAAAACGATCGACGAGTGGCTTTCGATCGACGACGACAAGATTTCGCACCGCGATGGAGATTTGGTTTACAGTCGTGCGATCGGGCCAGATCTTGGATTCTCCCCTCTCGTGTTCATCCAGGTGCGTCCGTCTTGTGTGTTGGTTTCCCTGACTCGGTTCAGGTGCGGCGGACTCTCCGTCGGCCTCAGTTGGGCTCACGTCCTCGGCGATATTTTCTCCGCCTCCACCTTCATCAACGCATGGGGCCACGTCATGAAAAACCGCCCGGTCGAACGACTCCGCCCACTGCCGGCGACTGCGGCGGACCTCATTCGGCCGTCCGGCTCAACTGGACGATCTACATCGCCGATCAAGCGGCTGGACTCGACTGGAGACCTTTGGATCGCTTCAAACGACTGCAAAATGGCGAAGCGGTCGTTTCGAATCACGGAAGAGAAACTGGTACGAATATTGAGCGTCGTCGACCGGAATCGATCGGCGAACTACTCCAGTTTTGAAGCTATTGCTGCGATTTTCTGGAAATGTCTGTCGAAAATACGGCTTGAGGACTCGGATTCGAAGACGATTTCGATCTATTCGACTAAATGTCCTGATAGAGAGGGTCAGATTCCGATAAATGGAATGGTGATGAGCGCCATCGAGGCCGATTTTCCGGTCGCCGGAGCGGAGGAAGGTGCGTTGGCGGAGCTGATTGTGAAGAAGAAAATCGACGAGGGCGAAGAAATCAAGGAATTGGTGGAGAAAGAAAGGGAGGATTCTGACTTCATAGCGTACGGCGCAAGATTGACGTTCGTTGATTTGGAAGAAGCGAATCTCTACGGCTTGGAATTGGAAGGACAGAGGCCAGTTCATGTGAATTATGAAATTGGGGGAGTCGGTGAAAACGGCGTCGTCTTGGTGCTTCCAGGGCCTCCACGTTGCGACGGTAGACCCGGCGGTGACCGGACGGTAACGGTGATCTTGCCGGAGAAACAGCTGCCGGAGCTGATCGATGAACTGCAGAAGCAATGGGCGATTGTTTAA 1347 52.41 MDGSGNELISEVKFSSVVPAKATGENKVHELSAIDLAMKLHYIRGVYFFRPSEEVRNLTIYDLKKPMFPLLEIYYVVSGRIRRRIEDRDRPFIKCNDSGVRIVEVECEKTIDEWLSIDDDKISHRDGDLVYSRAIGPDLGFSPLVFIQVRPSCVLVSLTRFRCGGLSVGLSWAHVLGDIFSASTFINAWGHVMKNRPVERLRPLPATAADLIRPSGSTGRSTSPIKRLDSTGDLWIASNDCKMAKRSFRITEEKLVRILSVVDRNRSANYSSFEAIAAIFWKCLSKIRLEDSDSKTISIYSTKCPDREGQIPINGMVMSAIEADFPVAGAEEGALAELIVKKKIDEGEEIKELVEKEREDSDFIAYGARLTFVDLEEANLYGLELEGQRPVHVNYEIGGVGENGVVLVLPGPPRCDGRPGGDRTVTVILPEKQLPELIDELQKQWAIV 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11828449 11830638 + CmoCh01G015310.1 Cmo01g01531 375014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01531 448 Gene3D - 238 439 IPR023213 -
Cmo01g01531 448 Gene3D - 9 229 IPR023213 -
Cmo01g01531 448 Pfam Transferase family 16 296 - -
Cmo01g01531 448 PANTHER PROTEIN ECERIFERUM 2 8 445 - -
Cmo01g01531 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01531 - - - cmo:103503654 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01531 Cmo-Chr1:11828449 Cmo17g00874 Cmo-Chr17:7979143 3.24E-17 dispersed
Cmo05g01218 Cmo-Chr5:9540223 Cmo01g01531 Cmo-Chr1:11828449 2.57E-24 transposed
Cmo08g00970 Cmo-Chr8:6293926 Cmo01g01531 Cmo-Chr1:11828449 2.92E-88 transposed
Cmo01g01531 Cmo-Chr1:11828449 Cmo08g00578 Cmo-Chr8:3539152 6.60E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g418 . . . Bda03g00059 . . Bma04g00058 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00046 . . . Cmo01g01531 . . . . . . Cpe02g00477 . . . . . . . . . . . . . . . . . .
Vvi18g523 . . . Bda03g00453 . Bpe04g00416 Bma04g00429 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . Cone7ag0861 . . Lsi04g02282 Csa03g04496 Chy04g00203 . . . Bda11g00803 . . . . . Sed13g1533 Cmo01g01531 . . . . . . Cpe02g00477 Bhi09g02503 Tan01g3855 Cmetu04g0115 . Hepe01g2172 Mch11g0712 . . . . . . . . . . . Cme04g00234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010250 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01531 Cmo_Chr01 FPKM 38.34948 40.167618 31.108316 31.967728 38.814442 38.109119 43.135345 37.281204 40.851582 36.3312