Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01535 ATGGCCAGACCTCAAAGGCAATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTCGTTGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCTAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCGAACACGATTCAGTCGTCGAATTCCAAGATCTTGTCGGCCAATTTGACTGCGAAATTGCATAGATGTTATATGGCTTCTTTGCAGATTAGTAACCAGGAGTTCAAAAGAGAACTTCCGCCGCCGTTTGCGGCGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCAACGGCGGCCGAGGCGGCGGAGCCAGAGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 492 48.58 MARPQRQYRGVRQRHWGSWVSEIRHPSLKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHRCYMASLQISNQEFKRELPPPFAAASYADAARSMVEENRPTAAEAAEPEELKLLEDDHIEQMIEELLYYGSMEFCL 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11839451 11840104 - CmoCh01G015350.1 Cmo01g01535 375018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01535 163 CDD AP2 7 66 IPR001471 GO:0003700|GO:0006355
Cmo01g01535 163 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cmo01g01535 163 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cmo01g01535 163 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 162 - -
Cmo01g01535 163 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo01g01535 163 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cmo01g01535 163 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cmo01g01535 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 162 - -
Cmo01g01535 163 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo01g01535 163 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01535 Cmo05g00361 CCT
Cmo01g01535 Cmo09g00470 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01535 Cmo-Chr1:11839451 Cmo05g00361 Cmo-Chr5:1637315 3.87E-62 dispersed
Cmo01g01535 Cmo-Chr1:11839451 Cmo12g00308 Cmo-Chr12:1914204 2.54E-65 wgd
Cmo01g01535 Cmo-Chr1:11839451 Cmo08g00588 Cmo-Chr8:3585257 1.84E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9121 PF00847 AP2 2.30E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01535 - - csv:101216179 223.787