Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01535 | ATGGCCAGACCTCAAAGGCAATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTCGTTGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCTAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCGAACACGATTCAGTCGTCGAATTCCAAGATCTTGTCGGCCAATTTGACTGCGAAATTGCATAGATGTTATATGGCTTCTTTGCAGATTAGTAACCAGGAGTTCAAAAGAGAACTTCCGCCGCCGTTTGCGGCGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCAACGGCGGCCGAGGCGGCGGAGCCAGAGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA | 492 | 48.58 | MARPQRQYRGVRQRHWGSWVSEIRHPSLKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHRCYMASLQISNQEFKRELPPPFAAASYADAARSMVEENRPTAAEAAEPEELKLLEDDHIEQMIEELLYYGSMEFCL | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11839451 | 11840104 | - | CmoCh01G015350.1 | Cmo01g01535 | 375018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01535 | 163 | CDD | AP2 | 7 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 162 | - | - | |
Cmo01g01535 | 163 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Cmo01g01535 | 163 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 1 | 162 | - | - | |
Cmo01g01535 | 163 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g01535 | 163 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01535 | Cmo05g00361 | CCT | |
Cmo01g01535 | Cmo09g00470 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01535 | Cmo-Chr1:11839451 | Cmo05g00361 | Cmo-Chr5:1637315 | 3.87E-62 | dispersed | |
Cmo01g01535 | Cmo-Chr1:11839451 | Cmo12g00308 | Cmo-Chr12:1914204 | 2.54E-65 | wgd | |
Cmo01g01535 | Cmo-Chr1:11839451 | Cmo08g00588 | Cmo-Chr8:3585257 | 1.84E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9121 | PF00847 | AP2 | 2.30E-12 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01535 | - | - | csv:101216179 | 223.787 |