Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01537 ATGATGGTGAACGACGACTGGCTTACGGCGGCCATGGCCGATGATGGAGTGGTGGTCGAGTTGTTGGTGCGGTTGAAGCAATCGCAGGCTGTGTCGCCTTCCAAATCTCCGCTTCCGGTGATGGTGCCGTTCACTTGGGGGATTAGGCAGCTGAGGTCTAGAACGGCGACGACGGTTGGTAGATGTGGCGATGGTGTCTTGGTGAGGAACAATAAGGATGTTGACTCAACCAGATGGAGTCCTACGACGCCGCTTTCGTGGAGCGGTGGAGGTTCGCCTTCTGCTACGCTTGACGGTTATGAGGAGTCTAGCCGTCCGGCAACACTCTCGCACGCTGCTTCCAGATTTAAGGGTGCTGCTGCAAATGAATCCGGAGCTGGTACTGCAACAAAGAGATTAAGACGAAAGAAGACATTTGCTGAACTTAAAGAAGAGGAGAGCGTGCTTTTGAATGAGAAAATTCATCTCAAAAAGGAACTTGCCAATCTAAGAGCTACCTTCGAAGAACAAAGAGCCAAGAATGAGAGTTTGAAGAAAATGAAGGTGGATTTCAACATGAAATACGCAGAAAAATTCAATACAAACTCCAAGATGATGATGATGCAAGAGGATTCTTCATCCACACTAACCCATCAAAGGGAAAGCTCTAACATTGAAGCAATTCCTCCAACATTGCTGCCACTCACCGGGGCAGGTTCGGGGAGGTTCGAGGCTGAATCGCAGAAGAAAAGCAATTCATCGACCGAAGACGATTGTGTCTTTTTCTTACCGGATTTGAATATGACACCTTCAGAGGATTGA 801 48.31 MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVMVPFTWGIRQLRSRTATTVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSHAASRFKGAAANESGAGTATKRLRRKKTFAELKEEESVLLNEKIHLKKELANLRATFEEQRAKNESLKKMKVDFNMKYAEKFNTNSKMMMMQEDSSSTLTHQRESSNIEAIPPTLLPLTGAGSGRFEAESQKKSNSSTEDDCVFFLPDLNMTPSED 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11859324 11863726 + CmoCh01G015370.1 Cmo01g01537 375020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01537 266 Coils Coil 153 180 - -
Cmo01g01537 266 PANTHER OS02G0182700 PROTEIN 2 266 - -
Cmo01g01537 266 MobiDBLite consensus disorder prediction 223 266 - -
Cmo01g01537 266 MobiDBLite consensus disorder prediction 74 104 - -
Cmo01g01537 266 PANTHER OS02G0182700 PROTEIN 2 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01537 - - - bhj:120085676 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01537 Cmo-Chr1:11859324 Cmo05g00367 Cmo-Chr5:1656796 2.26E-65 dispersed
Cmo01g01537 Cmo-Chr1:11859324 Cmo12g00303 Cmo-Chr12:1896126 1.30E-68 wgd
Cmo01g01537 Cmo-Chr1:11859324 Cmo08g00590 Cmo-Chr8:3594924 4.22E-25 wgd
Cmo01g01537 Cmo-Chr1:11859324 Cmo09g00432 Cmo-Chr9:1927367 6.22E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g536 . . . . . . . . . . Cma01g01481 . . . Sed11g1158 Cpe07g00309 . Bhi04g00031 Tan02g2746 Cmetu03g1252 . . . Lcy13g1812 . . . . . . . . . . . . . . . . . . Bda13g01248 . . . . Sed05g1724 Cmo01g01537 . . . . . . . Bhi09g02971 Tan01g3593 Cmetu07g0019 . . . . . . . . . . . . . . Cme07g00098
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001358 2 4 2 1 1 2 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 4 1 3 2 6 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01537 Cmo_Chr01 FPKM 14.811581 15.053155 28.168179 27.489002 9.847669 12.287852 10.885966 58.11261 62.374496 63.456097