Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01539 ATGTCTGACTTCGATACCATCTGTAACAGTCCAAGCCCACTGGAAATAGATATTGTCCACTTTGGCCCAGCCCCACGGATCGACCGCCATGGCCGCTACTTAATCACTAATTCCCTTCCCTTTTCTCTCTGCTCTTCCATGGCGTATCACAATCCCCTCTCCCACGACCTTCCCCTCCACTTCTCCGACCAACAACCGCCGCAGAATCAGCCACTTTCCGATGCCTCTTTGCGTACCATTCTCCCGGACCCCAAATCCCACCACCACCACCACCACCCGCCGCAAACGGCACCGAATTGGCTTAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACTACCACCACCGCCACCGCCGCCGTCAATACAAATTTCCTCAACCTTCACACCACTGCATCCGATTCCACTGTTTCTCACTCCTCTAACCAATGGCTCTCCCGTCCGATTCTCCAAAGAAACCACAGCGATGTTATTGCTGATGTCGCCGCCGCCGGTGACGCTATGATCGGTGCCGCTAACGATGCCAATAGCGGCGATGGATTGAACAAAAGCGAGGGCATGGCGGTGGAACCTGGCGGCGGCGGCGGTGGTGGTGGAGAAGGGGTTTTGAATTGGCAATATGCTCGTTACAAAGCCGAGATTCTTGCTCATCCGCTTTATGAACAGCTGCTTTCAGCTCATGTCGCTTGTCTTCGCATCGCCACGCCCGTCGACCAATTGCCGAGGATTGACGCACAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCCGCCTTGGGCCACACCGCGCCGCTCATGGTCGGCGACGACAAAGACCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCGTTCAAAGAACAACTCCAGCAACATGTTCGTGTCCATGCCATGGAAGCTGTCATGGCTTGCTGGGACATCGAGCAGTCGCTTCAAAGCTTAACAGGAGTTTCACCCGGCGAAGGCACGGGAGCGACAATGTCAGACGACGACGACGACCAGGTCGACAGCGATGCAAACTTGTTCGAAGCGAGTTTAGATTGTCCTGACACCATGGGATTTGGACCTCTTATTCCCACAGAAACTGAGAGGTCCTTAATGGAAAGGGTCAGACAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAAAGGAGAGCTGGAAAGCTCCCTGGTGATACCACCTCTGTTCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTCTGCAATTAAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCATAGCAATCCTTCGAGTTCTACAAACTTGAAAAGCAAACGCAAAAGGTGA 1440 50.97 MSDFDTICNSPSPLEIDIVHFGPAPRIDRHGRYLITNSLPFSLCSSMAYHNPLSHDLPLHFSDQQPPQNQPLSDASLRTILPDPKSHHHHHHPPQTAPNWLNNALLRNQNPHSHYSTDTTTTATAAVNTNFLNLHTTASDSTVSHSSNQWLSRPILQRNHSDVIADVAAAGDAMIGAANDANSGDGLNKSEGMAVEPGGGGGGGGEGVLNWQYARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPLMVGDDKDLDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFEASLDCPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKR 479
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 11883239 11888343 + CmoCh01G015390.1 Cmo01g01539 375022
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01539 479 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 85 479 - -
Cmo01g01539 479 SMART KNOX1_2 214 258 IPR005540 GO:0003677|GO:0005634
Cmo01g01539 479 SMART HOX_1 404 469 IPR001356 GO:0003677
Cmo01g01539 479 Pfam Homeobox KN domain 422 461 IPR008422 GO:0003677|GO:0006355
Cmo01g01539 479 CDD homeodomain 405 466 IPR001356 GO:0003677
Cmo01g01539 479 ProSiteProfiles ELK domain profile. 382 402 IPR005539 GO:0003677
Cmo01g01539 479 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 479 - -
Cmo01g01539 479 SMART ELK_2 382 403 IPR005539 GO:0003677
Cmo01g01539 479 MobiDBLite consensus disorder prediction 61 76 - -
Cmo01g01539 479 ProSiteProfiles 'Homeobox' domain profile. 402 465 IPR001356 GO:0003677
Cmo01g01539 479 SUPERFAMILY Homeodomain-like 404 468 IPR009057 -
Cmo01g01539 479 SMART KNOX2_2 270 325 IPR005541 GO:0003677|GO:0005634
Cmo01g01539 479 MobiDBLite consensus disorder prediction 459 479 - -
Cmo01g01539 479 Pfam KNOX2 domain 274 324 IPR005541 GO:0003677|GO:0005634
Cmo01g01539 479 MobiDBLite consensus disorder prediction 58 101 - -
Cmo01g01539 479 Gene3D - 403 464 - -
Cmo01g01539 479 Pfam ELK domain 382 403 IPR005539 GO:0003677
Cmo01g01539 479 Pfam KNOX1 domain 216 257 IPR005540 GO:0003677|GO:0005634
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01539 Cmo-Chr1:11883239 Cmo05g00368 Cmo-Chr5:1662445 0 dispersed
Cmo01g01539 Cmo-Chr1:11883239 Cmo12g00302 Cmo-Chr12:1887315 0 wgd
Cmo01g01539 Cmo-Chr1:11883239 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9122 PF03791 KNOX2 1.10E-20 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01539 - - bhj:120085761 738.413