Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01539 | ATGTCTGACTTCGATACCATCTGTAACAGTCCAAGCCCACTGGAAATAGATATTGTCCACTTTGGCCCAGCCCCACGGATCGACCGCCATGGCCGCTACTTAATCACTAATTCCCTTCCCTTTTCTCTCTGCTCTTCCATGGCGTATCACAATCCCCTCTCCCACGACCTTCCCCTCCACTTCTCCGACCAACAACCGCCGCAGAATCAGCCACTTTCCGATGCCTCTTTGCGTACCATTCTCCCGGACCCCAAATCCCACCACCACCACCACCACCCGCCGCAAACGGCACCGAATTGGCTTAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACTACCACCACCGCCACCGCCGCCGTCAATACAAATTTCCTCAACCTTCACACCACTGCATCCGATTCCACTGTTTCTCACTCCTCTAACCAATGGCTCTCCCGTCCGATTCTCCAAAGAAACCACAGCGATGTTATTGCTGATGTCGCCGCCGCCGGTGACGCTATGATCGGTGCCGCTAACGATGCCAATAGCGGCGATGGATTGAACAAAAGCGAGGGCATGGCGGTGGAACCTGGCGGCGGCGGCGGTGGTGGTGGAGAAGGGGTTTTGAATTGGCAATATGCTCGTTACAAAGCCGAGATTCTTGCTCATCCGCTTTATGAACAGCTGCTTTCAGCTCATGTCGCTTGTCTTCGCATCGCCACGCCCGTCGACCAATTGCCGAGGATTGACGCACAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCCGCCTTGGGCCACACCGCGCCGCTCATGGTCGGCGACGACAAAGACCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCGTTCAAAGAACAACTCCAGCAACATGTTCGTGTCCATGCCATGGAAGCTGTCATGGCTTGCTGGGACATCGAGCAGTCGCTTCAAAGCTTAACAGGAGTTTCACCCGGCGAAGGCACGGGAGCGACAATGTCAGACGACGACGACGACCAGGTCGACAGCGATGCAAACTTGTTCGAAGCGAGTTTAGATTGTCCTGACACCATGGGATTTGGACCTCTTATTCCCACAGAAACTGAGAGGTCCTTAATGGAAAGGGTCAGACAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAAAGGAGAGCTGGAAAGCTCCCTGGTGATACCACCTCTGTTCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTCTGCAATTAAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCATAGCAATCCTTCGAGTTCTACAAACTTGAAAAGCAAACGCAAAAGGTGA | 1440 | 50.97 | MSDFDTICNSPSPLEIDIVHFGPAPRIDRHGRYLITNSLPFSLCSSMAYHNPLSHDLPLHFSDQQPPQNQPLSDASLRTILPDPKSHHHHHHPPQTAPNWLNNALLRNQNPHSHYSTDTTTTATAAVNTNFLNLHTTASDSTVSHSSNQWLSRPILQRNHSDVIADVAAAGDAMIGAANDANSGDGLNKSEGMAVEPGGGGGGGGEGVLNWQYARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPLMVGDDKDLDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFEASLDCPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKR | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11883239 | 11888343 | + | CmoCh01G015390.1 | Cmo01g01539 | 375022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01539 | 479 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 85 | 479 | - | - | |
Cmo01g01539 | 479 | SMART | KNOX1_2 | 214 | 258 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo01g01539 | 479 | SMART | HOX_1 | 404 | 469 | IPR001356 | GO:0003677 | |
Cmo01g01539 | 479 | Pfam | Homeobox KN domain | 422 | 461 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo01g01539 | 479 | CDD | homeodomain | 405 | 466 | IPR001356 | GO:0003677 | |
Cmo01g01539 | 479 | ProSiteProfiles | ELK domain profile. | 382 | 402 | IPR005539 | GO:0003677 | |
Cmo01g01539 | 479 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 85 | 479 | - | - | |
Cmo01g01539 | 479 | SMART | ELK_2 | 382 | 403 | IPR005539 | GO:0003677 | |
Cmo01g01539 | 479 | MobiDBLite | consensus disorder prediction | 61 | 76 | - | - | |
Cmo01g01539 | 479 | ProSiteProfiles | 'Homeobox' domain profile. | 402 | 465 | IPR001356 | GO:0003677 | |
Cmo01g01539 | 479 | SUPERFAMILY | Homeodomain-like | 404 | 468 | IPR009057 | - | |
Cmo01g01539 | 479 | SMART | KNOX2_2 | 270 | 325 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo01g01539 | 479 | MobiDBLite | consensus disorder prediction | 459 | 479 | - | - | |
Cmo01g01539 | 479 | Pfam | KNOX2 domain | 274 | 324 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo01g01539 | 479 | MobiDBLite | consensus disorder prediction | 58 | 101 | - | - | |
Cmo01g01539 | 479 | Gene3D | - | 403 | 464 | - | - | |
Cmo01g01539 | 479 | Pfam | ELK domain | 382 | 403 | IPR005539 | GO:0003677 | |
Cmo01g01539 | 479 | Pfam | KNOX1 domain | 216 | 257 | IPR005540 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01539 | Cmo-Chr1:11883239 | Cmo05g00368 | Cmo-Chr5:1662445 | 0 | dispersed | |
Cmo01g01539 | Cmo-Chr1:11883239 | Cmo12g00302 | Cmo-Chr12:1887315 | 0 | wgd | |
Cmo01g01539 | Cmo-Chr1:11883239 | Cmo09g00434 | Cmo-Chr9:1954115 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9122 | PF03791 | KNOX2 | 1.10E-20 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01539 | - | - | bhj:120085761 | 738.413 |