Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01544 ATGTCCTACTCGAATATGGCGGGAGATCTACGCTCTTGGTCACACGCGCTCGTCAGAATCTCTCCCTACACCTTCTCCGCCGTCGGCATTGCCATAGCCATCGGCGTCTCCGTCCTCGGAGCTGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATTAAAGCTCCGCGTATTACCTCGAAGAATCTAATTAGCGTAATTTTCTGTGAAGCCGTGGCCATATATGGTGTCATTGTGGCCATCATCCTACAGACAAAACTGGACAGTGTTCCAGCATCCAAAATTTATGCTCCTGAGTCCCTAAGAGCAGGATATTCAATTTTTGCCTCTGGAATTATTGTGGGCTTCGCCAACCTGGTTTGCGGGTTATGCGTAGGGGTTATTGGAAGCAGTTGTGCATTGTCTGATGCCCAAAACTCATCCCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGGCTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTACAAAGGCAGTTTAA 549 47.72 MSYSNMAGDLRSWSHALVRISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLDSVPASKIYAPESLRAGYSIFASGIIVGFANLVCGLCVGVIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11905961 11907932 + CmoCh01G015440.1 Cmo01g01544 375027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01544 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 7 179 - -
Cmo01g01544 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo01g01544 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo01g01544 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cmo01g01544 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 7 179 - -
Cmo01g01544 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cmo01g01544 182 Gene3D - 23 178 IPR035921 -
Cmo01g01544 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cmo01g01544 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cmo01g01544 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo01g01544 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo01g01544 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo01g01544 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01544 Cmo-Chr1:11905961 Cmo05g00421 Cmo-Chr5:1939914 6.33E-109 dispersed
Cmo01g01544 Cmo-Chr1:11905961 Cmo12g00266 Cmo-Chr12:1716019 8.14E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01544 K03661 - twl:119992947 317.005