Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01551 ATGCAGGAACGAACCACCGCCGCCGCCTCCGCCGGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGGAGTGGGAAGTGATGAGGAGGAGATAAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGTAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATACGAGCAGCAAACTTGTTGAAAAGGAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAG 486 49.59 MQERTTAAASAGRTRSSSERSSSSAFLLDVKEGVGSDEEEISRVPQICGNSASAAGGTSASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11931626 11935000 + CmoCh01G015510.1 Cmo01g01551 375034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01551 161 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 144 IPR004827 GO:0003700|GO:0006355
Cmo01g01551 161 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g01551 161 MobiDBLite consensus disorder prediction 1 101 - -
Cmo01g01551 161 SMART brlzneu 79 143 IPR004827 GO:0003700|GO:0006355
Cmo01g01551 161 Pfam bZIP transcription factor 80 140 IPR004827 GO:0003700|GO:0006355
Cmo01g01551 161 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Cmo01g01551 161 Coils Coil 106 140 - -
Cmo01g01551 161 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 150 IPR044280 GO:0000981|GO:0045944
Cmo01g01551 161 CDD bZIP_HY5-like 84 135 - -
Cmo01g01551 161 Gene3D Single helix bin 102 143 - -
Cmo01g01551 161 Coils Coil 78 98 - -
Cmo01g01551 161 SUPERFAMILY Leucine zipper domain 83 141 IPR046347 GO:0003700|GO:0006355
Cmo01g01551 161 MobiDBLite consensus disorder prediction 73 101 - -
Cmo01g01551 161 MobiDBLite consensus disorder prediction 46 60 - -
Cmo01g01551 161 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 150 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01551 Cmo12g00279 CCT
Cmo01g01551 Cmo05g00389 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01551 Cmo-Chr1:11931626 Cmo05g00389 Cmo-Chr5:1756069 1.00E-50 dispersed
Cmo01g01551 Cmo-Chr1:11931626 Cmo12g00279 Cmo-Chr12:1791998 1.75E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9123 PF00170 bZIP_1 1.00E-11 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01551 K16241 - csv:101205952 209.92