Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01553 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGTATTCGCCATGATTCCGACAATGGGCCTAAACCTCTGAAGAACATAAACAGCCAAATATGTCAAATATGCGGCGACACCGTTGGTCTTACGGCCTCCGGTGATATCTTTGTCGCTTGCAACGAATGCGCCTTTCCTGTTTGTCGTCCGTGTTACGAGTACGAGAGGAAAGACGGCAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGTAGTCCCCGAGTCGATGGCGATGATGACGAGGATGACGTGGATGATATCGAGAACGAGTTTAAATACACCCAAGGAAGTAGCAAGACAAAACAACAATGGCGTGGGGAAGATACTGAGCTATCAACTTCTACAAGACATGAATCTCAACAGCCTATACCACTCCTTACCAATGGCCAATCAGTTTCGAGTGAAATTCCTTATGCAACACCCGACAATCAATCAGTACGAACGACATCCGGTTCGTTGGGTCCTCCAGACAAGCATTTGCACTCACATCCTTACGTCGACCCTCGACAGCCAGTTCCTGTGAGAATTGTTGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGATTGGAAGGAAAGAGTGGAAGGTTGGAAATTGAAACAAGAGAAGAACATAATGCAGATGACAAGTAGATACTCAGAAGGGAAGGGGGACTTGGAAGGCACTGGCTCCAATGGAGAAGAACTTCAAATGGCGGATGATGCTAGACAACCTCTAAGTCGTGTGGTTCCGATTCCGTCTTCTCACTTGACCCCGTATCGTGTCGTGATCATACTTCGACTTATTATTCTCGGCTTCTTCTTACAGTACCGTTTGACGCACCCGGTGAAAGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCGCTATCCTGGCTTTTGGATCAGTTCCCGAAATGGTCTCCGGTTAATCGTGAAACTTTCCTCGAGCGACTTGCATTAAGATACGATCGTGAAGGAGAACCGTCGCAGTTAGCTCCTGTTGATGTTTTTGTTAGTACTGTGGATCCTCTCAAAGAGCCTCCACTTGTCACGGCTAACACCGTGCTTTCCATCCTTGCTGTGGACTACCCTGTCGACAAAGTCTCCTGCTATGTGTCGGATGATGGTTCGGCAATGCTTTCGTTTGAATCGCTCTCTGAAACTGCAGAGTTTGCAAGGAAGTGGGTGCCTTTTTGCAAGAAGCATAGCATTGAACCAAGGGCCCCGGAGTTTTATTTTGCTCAAAAGATAGATTACTTAAAGGACAAGATTAAACCTTCGTTCGTAAAAGAGCGTCGAGCGATGAAGAGGGAGTATGAAGAATTCAAGATTCGAATCAATGCACTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGTGGTCTCGATACCGATGGCAATGAACTACCTAGACTTGTTTATGTTTCTCGTGAGAAACGTCCCGGCTTCCAGCACCACAAAAAAGCTGGAGCTATGAATGCATTGATCCGAGTTTCTGCCGTGCTAACTAATGGAGCGTATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTACGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGTAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGTCTCCAGGGTCCTGTCTATGTCGGAACTGGTTGTTGTTTCAATCGACAAGCTTTATACGGTTATGATCCAGTCCTGACCGAGGCAGACTTGGAACCGAACATTATCATTAAGAGTTGTTGTGGTTCGAGAAAGAAGCACCGGAATAAGAAGTACGTCGACAAGAAGAGGGCTGCAAAAAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGTTCACTCCTGATGTCTCAGAAGCGTATAGAAAAACGCTTCGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATACCACCTTCAACCAACCCTGCAACACTGCTAAAGGAAGCAATTCATGTCATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAGGAGATTGGGTGGATCTATGGTTCCGTGACAGAAGATATTTTGACGGGGTTTAAGATGCATGCTCGTGGTTGGATTTCGATATATTGTATGCCTCCACGCCCGGCGTTTAAGGGATCTGCTCCGATCAATCTTTCGGATCGATTGAACCAAGTGCTTCGATGGGCTTTGGGTTCGATAGAGATTTTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATTGTCTACCCTATCACCTCAATTCCACTTCTTGCATACTGTACGCTTCCAGCCTTCTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATTTTCGCCACCGGTATTCTCGAGCTTAGATGGAGCGGAGTTAGCATTGAAGACTGGTGGAGAAACGAACAATTTTGGGTAATTGGTGGTACTTCAGCTCATCTGTTTGCTGTCTTCCAAGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACCGTCACGTCGAAGGCCAGCGACGATGACGGGGATTTTGCAGAGCTTTACGTGTTCAAATGGACTTCCCTCCTCATCCCTCCCACCACTGTCCTTATTATAAACATGGTTGGCATAGTGGCTGGTGTTTCATATGCCATTAACAGTGGTTACCAATCTTGGGGCCCTCTCTTTGGGAAGCTGTTCTTTGCATTATGGGTCATTGTCCATTTATATCCTTTCCTAAAGGGTTTATTGGGGAGGCAAAACCGAACCCCTACCATTGTCATCGTCTGGTCGATTCTCCTCGCTTCGATATTCTCCTTGCTTTGGGTGCGAATCGACCCGTTCACCTCTGCGTCGACGAAGGCTGCCAATGGTCAATGTGGTATCAATTGCTAG 3249 45.92 MEANAGLVAGSYKRNELVRIRHDSDNGPKPLKNINSQICQICGDTVGLTASGDIFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFKYTQGSSKTKQQWRGEDTELSTSTRHESQQPIPLLTNGQSVSSEIPYATPDNQSVRTTSGSLGPPDKHLHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYSEGKGDLEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLSFESLSETAEFARKWVPFCKKHSIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKHRNKKYVDKKRAAKRTESTIPIFNMEDIEEGVEGYDDESSLLMSQKRIEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCTLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIINMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11951151 11959988 + CmoCh01G015530.1 Cmo01g01553 375036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01553 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmo01g01553 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Cmo01g01553 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo01g01553 1082 MobiDBLite consensus disorder prediction 137 174 - -
Cmo01g01553 1082 PANTHER CELLULOSE SYNTHASE 19 1082 - -
Cmo01g01553 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1082 - -
Cmo01g01553 1082 SUPERFAMILY RING/U-box 22 111 - -
Cmo01g01553 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cmo01g01553 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cmo01g01553 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo01g01553 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Cmo01g01553 1082 Coils Coil 456 476 - -
Cmo01g01553 1082 MobiDBLite consensus disorder prediction 74 177 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01553 Cmo09g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01553 Cmo-Chr1:11951151 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo09g01185 Cmo-Chr9:8679508 Cmo01g01553 Cmo-Chr1:11951151 0 dispersed
Cmo20g00638 Cmo-Chr20:3134357 Cmo01g01553 Cmo-Chr1:11951151 7.09E-127 dispersed
Cmo01g01553 Cmo-Chr1:11951151 Cmo09g00475 Cmo-Chr9:2136134 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01553 K10999 - csv:101205724 2152.1