Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01559 ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACCGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATGGGGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAATGCCCACATCGGTGTCTGGCAGAAGCGTGCAGGCACTCGAGCAGCCTCCGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACACCGCCGCCGTCGATGTCGCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCCGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTTAGTTGGAACTGCCCCCTTCCTTCAACTTCAAGCTAG 585 53.5 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASDWVMRIELGKKETPPPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIEELLSWNCPLPSTSS 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11988840 11990030 - CmoCh01G015590.1 Cmo01g01559 375042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01559 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cmo01g01559 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 MobiDBLite consensus disorder prediction 141 170 - -
Cmo01g01559 194 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
Cmo01g01559 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cmo01g01559 194 MobiDBLite consensus disorder prediction 58 83 - -
Cmo01g01559 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cmo01g01559 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01559 Cmo-Chr1:11988840 Cmo12g00308 Cmo-Chr12:1914204 1.25E-30 dispersed
Cmo01g01559 Cmo-Chr1:11988840 Cmo11g00545 Cmo-Chr11:2650406 5.02E-70 wgd
Cmo01g01559 Cmo-Chr1:11988840 Cmo09g00470 Cmo-Chr9:2110532 9.15E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9124 PF00847 AP2 1.80E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01559 - - mcha:111006480 350.517