Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01560 ATGTCGAAGCTCTATGAATATTCCGGTAGTGAAGACTTTTGTCCTGGGAGTTCGATGTACACAAATCCTAAGGACTCGAGTTTATTCTTGTCCCTTCCTCACCATGTTGATCTCTATTTTCCCCCTCGCAAGAGGTCTCGCATCACTGCTCCATTTGTGTTTGGATCAAAGGCTAATGTCTCTATCGACATTCTTCCAGATGAGTGCCTATTTGAGATCTTCAGACGATTGCCTGGTGGCAAAGAAAGGAGTGTCTGTGCAAGCGTTTCTAAAAAATGGCTCATGCTTTTGAGCACTATATCTTGCCACGAATTGAAGTCTGAGAATGAGGCAGCCTCAAAGGAGGCTGAAGACATTGAAATTGAGAGTGATGGATATCTGTCCAGACGTTTGGAAGGGAAGAATGCGACAGATCTGAGGCTTGCTGCCGCTGCTGTTGGAACTGCAAGTCGAGGAGGTTTAGGCAAGCTCGTGATCCGTGGAAATAATCAGATCAGCAAGGTGACTGACCTTGGACTCAAGGCAATTTCTCGTGGATGTCAATCTCTGAGGGCTCTTTCTTTGTGGAATCTGTCGTCCATTGGAGACGAAGGTCTTTGTGAGATTGCCAAGGTTTCTCACCAATTAGAGAAGCTTGATCTCTGTAAGTGTCCTGCTGTATCTGACAAGGCTGTGATTGAGATAGCAAGAAACTGCCCGAAGTTGACCGATATTACCATAGAATCTTGTGCAAGAATTGGAAATGAGAGTATGCGAGCTATTGGGCAGTACTGCCCGAAGCTGAAGTCTATCGCGATTAAAGATTGCTCACTTGTTGGAGATCAAGGAATTGCCAGTTTATTGTCTTTGAACACTTGTGCTTTGAACAAGGTGAAGCTTCAAGCTTTGAACATTTCTGATGTGTCCCTCGCTGTTATCGGGCATTATGGCAAGGCAGTTACCGACCTTGCCCTCACCGATCTAAAGAACCTTAGTGAGAAAGGGTTCTGGGTCATGGGCAATGGTCATGGACTACAAAAGTTGAAGTCATTCACAATCTCCTCCTGCAATGGAGTAACAGACATGGGACTTGAATCTGTTGGAAAGGGTACTCCAAACTTAAAGCATTTCTGTCTAAGGAAATGTTCATTTTTATCCGACAATGGTGTGGTCGCTTTTACGAAAGCTGCCAGGTCGCTCGAGTGCATGCAATTGGAGGAGTGCCACAGGATTACTCAATTTGGATTCTTTGGTGTTCTTTTGAACTGCAGTACAAATTTGAAGGCTCTTTCTCTCATAAGCTGCTTGGGAATTAAGGACGTTAGCTCAGAATTGCCCATCCAAGCCTCGAGCGGATCCTTGAGGTCGTTGACCGTTCGTAACTGCCATGGTTTTGGCAACAGAAACCTTGCTTTACTGGGCAAGCTGTGTCCTCGGCTGCAGAATGTGGATTTTAGCGGACTTGTTGGAATTGACTGTTGTGGGTTTCTAGCTTGGCTTCAAAACTGTCAGTCAGGTTTGGTGAAGATCAATGTCAGTGGTTGTGTCAACCTGACCGACAAAGTGGTTTCATCCATAATCAAGCACCATGGTTGGACCCTCGAAATGCTTAATCTCAATGGTTGTAGGAAGATCACCGATGCTATCTTGACATCCATTGCAAACAACTGCCCGCTATTAAGTGATCTCGATGTCTCGAAATGTTCGATCACAGATTCAGGGATTGCAACTCTAGCCCGTTCCACGCAACTGAATCTACAGATCTTTTCAGTTTCTAGTTGCTCATTCGTATCTGATAAAAGCTTGGCAGACTTGATAAAATTGGGTGAGACTCTTATGGGTCTGAACATCCAGCACTGCAATGCAATCAGCAGTAGCACTGTTGATCTGCTTGTGGGGCAGCTATGGAGGTGCGACGTTCTTTCATAA 1908 45.13 MSKLYEYSGSEDFCPGSSMYTNPKDSSLFLSLPHHVDLYFPPRKRSRITAPFVFGSKANVSIDILPDECLFEIFRRLPGGKERSVCASVSKKWLMLLSTISCHELKSENEAASKEAEDIEIESDGYLSRRLEGKNATDLRLAAAAVGTASRGGLGKLVIRGNNQISKVTDLGLKAISRGCQSLRALSLWNLSSIGDEGLCEIAKVSHQLEKLDLCKCPAVSDKAVIEIARNCPKLTDITIESCARIGNESMRAIGQYCPKLKSIAIKDCSLVGDQGIASLLSLNTCALNKVKLQALNISDVSLAVIGHYGKAVTDLALTDLKNLSEKGFWVMGNGHGLQKLKSFTISSCNGVTDMGLESVGKGTPNLKHFCLRKCSFLSDNGVVAFTKAARSLECMQLEECHRITQFGFFGVLLNCSTNLKALSLISCLGIKDVSSELPIQASSGSLRSLTVRNCHGFGNRNLALLGKLCPRLQNVDFSGLVGIDCCGFLAWLQNCQSGLVKINVSGCVNLTDKVVSSIIKHHGWTLEMLNLNGCRKITDAILTSIANNCPLLSDLDVSKCSITDSGIATLARSTQLNLQIFSVSSCSFVSDKSLADLIKLGETLMGLNIQHCNAISSSTVDLLVGQLWRCDVLS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11995305 11999042 + CmoCh01G015600.1 Cmo01g01560 375043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01560 635 Gene3D Ribonuclease Inhibitor 138 215 IPR032675 -
Cmo01g01560 635 Gene3D Ribonuclease Inhibitor 439 635 IPR032675 -
Cmo01g01560 635 Coils Coil 102 122 - -
Cmo01g01560 635 SMART LRR_CC_2 338 363 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 206 231 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 576 601 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 180 205 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 258 283 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 550 574 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 444 469 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 497 522 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 232 257 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 470 495 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 524 549 IPR006553 -
Cmo01g01560 635 SMART LRR_CC_2 364 389 IPR006553 -
Cmo01g01560 635 PANTHER UNCHARACTERIZED 17 626 - -
Cmo01g01560 635 SMART fbox_2 65 106 IPR001810 GO:0005515
Cmo01g01560 635 SUPERFAMILY F-box domain 62 98 IPR036047 GO:0005515
Cmo01g01560 635 Pfam Leucine Rich repeat 550 572 IPR001611 GO:0005515
Cmo01g01560 635 Gene3D - 56 105 - -
Cmo01g01560 635 SUPERFAMILY L domain-like 323 482 - -
Cmo01g01560 635 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 626 - -
Cmo01g01560 635 SUPERFAMILY RNI-like 168 599 - -
Cmo01g01560 635 Gene3D Ribonuclease Inhibitor 227 438 IPR032675 -
Cmo01g01560 635 Pfam F-box domain 63 103 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01560 K14515 EBF1_2; EIN3-binding F-box protein - csv:101207154 1108.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01560 Cmo05g00383 CCT
Cmo01g01560 Cmo12g00287 CCT
Cmo01g01560 Cmo12g00287 ECH
Cmo01g01560 Cmo05g00383 ECH
Cmo01g01560 Cmo09g00469 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01560 Cmo-Chr1:11995305 Cmo05g00383 Cmo-Chr5:1722719 0 dispersed
Cmo01g01560 Cmo-Chr1:11995305 Cmo12g00287 Cmo-Chr12:1823603 0 wgd
Cmo01g01560 Cmo-Chr1:11995305 Cmo09g00469 Cmo-Chr9:2105356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01560 Cmo_Chr01 FPKM 49.646133 63.543354 59.611088 60.780197 22.830698 16.976442 19.63028 130.102509 137.995972 140.792847