Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01561 ATGCGGGCTTCGACATCGACACGACCAATCCAATCGCTTCGGTGTCTTCAATGGCCGCTCGTTGCCGAGGACACCAGTTTTGTTGCCATGGTTTTGAAGGTCACGTGGACTTCAATTGGACTTGCCCGCTTGGTTCTAGACAACTTCTTGCCCTGCTGGCCTACGCTTTTCGCTTGGAGCCAGCTGCGAGGAGAGATTCTAATGGAGCTTCAACTTGAGCTAGCACTTTCTGTTCCTGATCGCACCAGAGGCTTCGACCTGAACAGAAATGCATGTGATAGAGATGTGTTTGGTTCAGATCCGAGGAGCTGTGTGTGTGAACAAAGCACGAGCCATGGTAGACACAAGCGTGGCTTTGAAGATGCTTTCTTTAAGAGCAAAGACTCGTCTAAAGATCTGTCTTTGCTGCTGTGGAGCGATCGCTCTAACAAGGAAGATGATGACAGAAAGGACACCAACCATAGAAGCTCCTGTGCTATACACATACTCGGTTCTGATCAGACGAACAATCATTATTGGATGGAAGACAATGAAGACGATGGAATCGTTTTTAACCCGAAATATGTGAAGGTGAAGATGGAGGGAGTGGCAATAGCTAGGAAGATTGATGTGGGGCTGTATAGCTCTTATCAGACGCTGAAAACCGCCTTGATCAACATGTTTTCCAATTCTTGCTATCAAAAGTGTGGGTATATCAATGACAGCTTGACTCTCACCTATCAGGACAAAGAAGGAGATTGGATGCTTGCAGAAGATCTTCCATGGCAGATGCCCCCAAGACAAGGCTCTAGGCCTTTTGAATGTGTGAGAAGAGCTTGGCATTGTGAAAGACATCAACCCATTAGAGGTTCTCTCATTCAAGAGATTTTCAGGGTTGTGAGTCAAGTTCATTGCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAACTCCCCATTGTTGTTCTTAAAGCTGAGGAAATTCTCTATTCTAAAGCTGATTCTGAGGCTGAATACATGGATATTACTACTCTATGGACCCGAATAAACGAAGCGATTAATACGATAATTCGGCTTGATGGGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGTTTGGTTGAGATGGTATGGAATCTTCAAATGGGGATTCCCCGACCCGAACCCGATTCTCCGAAACGGGGAATGGGGTAGGGACGGGATGATTGACTATGGAGACAGGGATGGGGAGTGCGTCTCCACCCCGCCCCGCCCCGCCCCATTGCCATCCCTATGCCTATGGTTATCAATATATAGGAAATTGTCAATGGAACTCTCTGCTCTCTATTTGGGTTGCACGCCGAGACGATCGTCGAGGAGTAACCGAGGTAGTAACCTGAGGGGCTACCTTACTTCCTGCTCTCCACAAGTCCTAGAAACATCATCTCACTACCTCAACACCATTAGACCAGCTGTTCTGAGTTCATCTTGTACCATACCTGATGCCAGACCGAAAAGCCAAATCCATGTGGGTAATCCCATCGGAGTTAGCACGAACTCGAAATCCTCGACCGTATATAAGAACATTTGGCCATCAATCAGTAGCCAACAGTTCCTTACAGAGACTGTTTCAGGATGGAACATGTTTTCTTTGTGTCCATTGTACAATGGAAGCAATCAGCACGAACCCGGTATCAATATCCAACCTATGCCCCTCTACAACGATCCGAGTTTCTCTGTTCCAGCTCCGTTTAAGTACTTCCATTCCAGTGAGCTGATTGCTGCAAGACACAACAACGTTGATTCTGTTAATACTCTTCACGAGCAACAGAAAACAGCCTGCAATCTATCGTTGCGGTTGGGTCCTCTCTCCATTCCACATCCAAGCATGAACAACGATCGATCCAAGTCGATCACAGACATCGGTGCTAACGACTCTCAAAACCAGATGACGAGTTCTTCCGATCTTGTTTTGGATCCGTGGATCTCTGCTACCTTCGGCATTATCTCTTTCTCTCTTGTTGCAGATCCTTTACGCAGCTTCTTCAATCTCGCGCCTCGAATCGAAGCTCACACGGCTTTGTTTTTCATGAGTTTACAACAAATGATGGAATCAGAAATCCTTGTACCTGCTGATGGGCTCAAACTGACCCTTCAAAATGGGTTTCATGACCATATTTCTGACAACTCAGAGGACATCGTTGCGAAAGTTATAGTGAGCGAGGGCATAAGCAATGACGTCGGGGCTACAACTCAGCAAGGAAATATGGAAAATGATCTCAAATTGAGTGGCAGTGCAACTAATGATTCAAAGACTAGGGAACTCATGGAGGGATCAAGAGGGGAAAAGAATGTTGATCCTTCTAAGCAAGTAAAACCAGAGAAGGGTCAAATCAAGAGCAAAAATGAAAAGTCATCAGGCCCTAAACACATTCATTCGACAGGGGTGATTAAGAATAAACATGGAAAAGATTCGGAACAGACTGCTGCTCTTTTAAATGGTTCTACCTCAGGTACAGGTACAGGTACATCGCATCCACACTCGAAGCAACATTATAAGAGTAGATCATTCAATGACAGGCAAGCTCAAGTGCCAAAGCAATCTGAGAAGTCTGATGGAGAAGGATCAAAGGAGAATACGAACTTGAAACCTTTGCAGAAAGGTCATCCTAGTAAGTCAGAAGAAGAATCAGAATCTTCTTTGTATCCTTTGTTTCTTATTTACCGTCAGATATATTTTCCTGAAATGAATGTGTTCTATTCGAAACTTGAGGAAAAGATACAAGCCAAGGAAGTAGAAAAGAATACTTTACAGGCAAAGTCCAAGGAAACTCAAGAGGCTGAGATTAAAATGTTTAGAAAGAGCTTGAACTTTAAAGCAACACCCATGCCTAGCTTTTATCAGGAACCACCTCCACCCAAAGTAGAATTGAAAAAGATACCACCTACAAGAGCCAAGTCTCCCAAGCTTGGCCGAAAGAAGGGTTTGAGCCCGGCAGACACTTCGAGTAATGATGGTGGTGATTTTCGATCAGTTCGCTTAAGCCTTGATGAGAATGCGGCTCTGATTAATAATTCCAAGGGGGTCTCTCCTGCTCGTTCAGAGAAGCCTAAACGCAGGTCTCTTCCTAGACTGCCTTCTGAGAAAAGTGCACTATCTGGTGTCATAGCACATGTAGGAAAACCCTCTGCAATTAAGGTGAAAAATGCAGAGAAGCCTGCTGCTGCTGCAGCATCTACAATTGGAAAGAAAGAAGAAAAACGTGCATCATCTGATGCATCAACAGAGAAGCCTGCGAGTTTACAAACGGTAGACGAAGAGAAAATTGCTCCCTCGGACACGACAAACAAAGTAGTAGCCTCTCTTAGCCAGGAAGAGAACGGAGTTGCAACAGCTGAGCCTAGTGAAACAGGGATCAATTCGGACGAAGAGGAGGCAGAGAATGAAGAAGAATATCATCAGCATCAGACGTCGGTGGAAGAAGCTGTAGAATCGGAGCAGCTATCAAGCGTTTAA 3483 45.13 MRASTSTRPIQSLRCLQWPLVAEDTSFVAMVLKVTWTSIGLARLVLDNFLPCWPTLFAWSQLRGEILMELQLELALSVPDRTRGFDLNRNACDRDVFGSDPRSCVCEQSTSHGRHKRGFEDAFFKSKDSSKDLSLLLWSDRSNKEDDDRKDTNHRSSCAIHILGSDQTNNHYWMEDNEDDGIVFNPKYVKVKMEGVAIARKIDVGLYSSYQTLKTALINMFSNSCYQKCGYINDSLTLTYQDKEGDWMLAEDLPWQMPPRQGSRPFECVRRAWHCERHQPIRGSLIQEIFRVVSQVHCPATKKNKEWQEKLPIVVLKAEEILYSKADSEAEYMDITTLWTRINEAINTIIRLDGDTETGEFLHPCIEVWLRWYGIFKWGFPDPNPILRNGEWGRDGMIDYGDRDGECVSTPPRPAPLPSLCLWLSIYRKLSMELSALYLGCTPRRSSRSNRGSNLRGYLTSCSPQVLETSSHYLNTIRPAVLSSSCTIPDARPKSQIHVGNPIGVSTNSKSSTVYKNIWPSISSQQFLTETVSGWNMFSLCPLYNGSNQHEPGINIQPMPLYNDPSFSVPAPFKYFHSSELIAARHNNVDSVNTLHEQQKTACNLSLRLGPLSIPHPSMNNDRSKSITDIGANDSQNQMTSSSDLVLDPWISATFGIISFSLVADPLRSFFNLAPRIEAHTALFFMSLQQMMESEILVPADGLKLTLQNGFHDHISDNSEDIVAKVIVSEGISNDVGATTQQGNMENDLKLSGSATNDSKTRELMEGSRGEKNVDPSKQVKPEKGQIKSKNEKSSGPKHIHSTGVIKNKHGKDSEQTAALLNGSTSGTGTGTSHPHSKQHYKSRSFNDRQAQVPKQSEKSDGEGSKENTNLKPLQKGHPSKSEEESESSLYPLFLIYRQIYFPEMNVFYSKLEEKIQAKEVEKNTLQAKSKETQEAEIKMFRKSLNFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKGLSPADTSSNDGGDFRSVRLSLDENAALINNSKGVSPARSEKPKRRSLPRLPSEKSALSGVIAHVGKPSAIKVKNAEKPAAAAASTIGKKEEKRASSDASTEKPASLQTVDEEKIAPSDTTNKVVASLSQEENGVATAEPSETGINSDEEEAENEEEYHQHQTSVEEAVESEQLSSV 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12001478 12016139 - CmoCh01G015610.1 Cmo01g01561 375044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01561 1160 Coils Coil 909 936 - -
Cmo01g01561 1160 PANTHER PROTEIN WVD2-LIKE 5-RELATED 908 1132 - -
Cmo01g01561 1160 PANTHER PROTEIN WVD2-LIKE 4 692 892 IPR044833 GO:0008017
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 815 836 - -
Cmo01g01561 1160 SUPERFAMILY CAD & PB1 domains 185 257 - -
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 736 888 - -
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 762 797 - -
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 1103 1126 - -
Cmo01g01561 1160 PANTHER PROTEIN WVD2-LIKE 5-RELATED 692 892 - -
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 1014 1160 - -
Cmo01g01561 1160 ProSiteProfiles PB1 domain profile. 186 270 IPR000270 GO:0005515
Cmo01g01561 1160 Pfam Targeting protein for Xklp2 (TPX2) domain 908 964 IPR027329 -
Cmo01g01561 1160 Pfam AUX/IAA family 180 257 IPR033389 -
Cmo01g01561 1160 Gene3D - 184 264 - -
Cmo01g01561 1160 PANTHER PROTEIN WVD2-LIKE 4 908 1132 IPR044833 GO:0008017
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 736 761 - -
Cmo01g01561 1160 MobiDBLite consensus disorder prediction 950 999 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01561 - - - csv:101207396 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01561 Cmo09g00468 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01561 Cmo-Chr1:12001478 Cmo05g00381 Cmo-Chr5:1714272 1.61E-50 dispersed
Cmo10g00570 Cmo-Chr10:2588911 Cmo01g01561 Cmo-Chr1:12001478 5.44E-21 dispersed
Cmo09g00468 Cmo-Chr9:2099770 Cmo01g01561 Cmo-Chr1:12001478 2.44E-54 transposed
Cmo01g01561 Cmo-Chr1:12001478 Cmo12g00290 Cmo-Chr12:1841505 8.69E-49 wgd
Cmo01g01561 Cmo-Chr1:12001478 Cmo09g00462 Cmo-Chr9:2072448 1.49E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g483 . Blo12g01076 Bda01g00746 Bda03g00071 . . Bma04g00068 . . . Cma01g01504 . Car09g00402 . . . Cpe06g00341 . . . . . . . Cla05g01738 Cam05g1851 Cec05g1863 Cco05g1924 Clacu05g1841 Cmu05g1722 Cre05g1854 Cone4ag1784 Cone7ag1699 Cone17ag1020 Cone20ag0671 Lsi04g02130 Csa03g04336 Chy04g00366 . . Blo18g00025 Bda01g01001 . . Bpe04g00056 . . Sed05g1701 Cmo01g01561 Cmo09g00468 Cma09g00459 . . . . Cpe02g00451 Bhi09g02239 Tan01g3647 Cmetu04g2939 . Hepe01g2022 Mch11g0556 . . . . . . . . . . . Cme04g00408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014588 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9125 PF02309 AUX_IAA 9.60E-17 CL0072 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01561 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 3.045625 0.0 0.630944 0.0 0.0 0.0