Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01565 ATGGAGGAAGTCTGTCTTAATAGTGAGCCTATCTTTGATGAATGTGACGAGTATGAGGTGGATGGCGATGGTGCCTTCGTGGACAATGGTAACGAATCTGGGGAAGCACAGTCAAAGAAGAATCCTCCACTGCCAACAGTAGGTTTGGAGTTTGATTCTTTTGATGAGGCATATGACTTCTATAACGTTTATGCTAAGGAACTGGGATTTGGCATCAGAGTCAGTAATTCGTGGTTCCGATCTAAGAGAAAGGAGCGATATAGAGCTAAACTTAGCTGCAGCAGTGCGGGATTTAAGAAAAAGAGTGAAGCCAACAATCCAAGGCCGGAAACTAGAACTGGTTGTCCTGCAATGATAATTATTAGGCTGGTTGACACCAAAAGGTGGAGAATAGTTGAAGTGGAGCTTGAACACAACCATCCAGTGAATCCACAAATCACTCGATTTTACAAGTCACATAAAAAGATGATTCTTGCTGCGAAGAAAGCACAGCCACAGCTGCATCCTGTAACCGAAGTTCATACCATCAAGCTGTATAGATCAACTACTCTCAATGGTTGTAGTGGATGCTCAAATGTTGACCAAAGAGAGGGTATCAGTTCCGTTGATCACTTGAAACACTTGGAACTTAAAGATGGGGATGGACATGCACTGTATAATTATTTCTGCCGCATGAAATTGACAAATCCCAATTTCTTTTACTTGATGGATCTTGACAATGATGGGCACTTGAGAAATGTGTTTTGGGCAGACGCCCGGTCGAGGACTACATATAGTTACTTTTGTGATACCATCACTATAGACACAACATGCTTAACAAACAGATACGAGATTCCTCTGATTTCGTTCGTCGGTGTGAACCACCATGGGCAATCAGTGTTGTTAGGATGTGGCTTTGTTGGCTTTGAATCAGTGGAGTGTTTTGTTTGGATTTTGAAGGCATGGCTTCAATGCATGCTGGGATGCTCTCCACAGGTCATCATTACTGACCAAAATAAAACACTGGTAGCTGCAGTCTCTGAAGTTTTCCCTAAAGCTTGTCACTGTTATTCTACGTGGTATATCATGCAAAGAGTACCAGAAAAGTTGGGTGGATTGAAAGGATATGAAACAATAAGAAGCCAATTGAACAAAACCATTTTTAGCTCATTGAAGATAGCTGAATTTGAAATTTCGTGGACTAATATGATCAAGCACAACGCGCTTGGAGATAATAAATGGCTCCAATCACTGTATGAAGATAGAACATTATGGGCTCCTGTATACTTAAAAGACATATTTTTTGCAGGAATGGTCCCTATCCATGCAAACGAGAGCTTTAAAACGTTTTTCGATGGGTATGTACATAAACACACATCTTTTAAGGAATTTCTCGATAAGTATGATCTTGCCCTCCATAGGAAATACCATAAAGTATCAGTTGCAGATCTGGAGTCGAGAAATTTAAGCCTCGAGTTGAAAACGAGATGTAATTTTGAATTGCAGCTCTCCAAGGTGTACACAAAAGACATATTTAGCAAGTTCCAATCTGAGGTAGAAGGAATGTACTCTTGCTTCAACACAAGGCAGGTCAGTGTAAATGGGCCTATAGTAACTTACATTGTCAAAGAAAGGATTGAAGTTGAGGGAAACGAGAAAGAGGTAAAATATTTCGAGGTCTTATATGAGACAACTGAAGTGGACATTCGATGCATTTGCAGTTTATTCAACTACAAAGGTTACCTTTGCAGGCATGCGTTAAATGTTCTAAATTATAACGGCGTGGAAGAAATCCCCGCTCGCTACATTCTGCCACGGTGGTGTAAAGATTTCAAACGCAGGTATCTCCTAGGTCAGAGCCTAAGTAATACAAATATGTATAGTTCATCATACCAATATAGTCACATTCTTAATTGTGCCCTTCCAGTTGTAGAGGAAGGTGCACAATCTCAAGAACGTTATAAGCTTGCCTTGCAAGAACTGGAGAAGTTGTTGAATAAACTAAATCTTGTAGAGGATAATCCAAATAACGATGGATAG 2019 40.27 MEEVCLNSEPIFDECDEYEVDGDGAFVDNGNESGEAQSKKNPPLPTVGLEFDSFDEAYDFYNVYAKELGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIIIRLVDTKRWRIVEVELEHNHPVNPQITRFYKSHKKMILAAKKAQPQLHPVTEVHTIKLYRSTTLNGCSGCSNVDQREGISSVDHLKHLELKDGDGHALYNYFCRMKLTNPNFFYLMDLDNDGHLRNVFWADARSRTTYSYFCDTITIDTTCLTNRYEIPLISFVGVNHHGQSVLLGCGFVGFESVECFVWILKAWLQCMLGCSPQVIITDQNKTLVAAVSEVFPKACHCYSTWYIMQRVPEKLGGLKGYETIRSQLNKTIFSSLKIAEFEISWTNMIKHNALGDNKWLQSLYEDRTLWAPVYLKDIFFAGMVPIHANESFKTFFDGYVHKHTSFKEFLDKYDLALHRKYHKVSVADLESRNLSLELKTRCNFELQLSKVYTKDIFSKFQSEVEGMYSCFNTRQVSVNGPIVTYIVKERIEVEGNEKEVKYFEVLYETTEVDIRCICSLFNYKGYLCRHALNVLNYNGVEEIPARYILPRWCKDFKRRYLLGQSLSNTNMYSSSYQYSHILNCALPVVEEGAQSQERYKLALQELEKLLNKLNLVEDNPNNDG 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12038282 12041752 - CmoCh01G015650.1 Cmo01g01565 375048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01565 672 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Cmo01g01565 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 20 666 - -
Cmo01g01565 672 SMART 26again6 562 589 IPR006564 GO:0008270
Cmo01g01565 672 Coils Coil 644 667 - -
Cmo01g01565 672 Pfam MULE transposase domain 265 357 IPR018289 -
Cmo01g01565 672 MobiDBLite consensus disorder prediction 23 44 - -
Cmo01g01565 672 Pfam SWIM zinc finger 559 584 IPR007527 GO:0008270
Cmo01g01565 672 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
Cmo01g01565 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 666 IPR031052 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01565 K17604 ZSWIM3; zinc finger SWIM domain-containing protein 3 - csv:105435026 1221.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01565 Cmo-Chr1:12038282 Cmo16g00537 Cmo-Chr16:2608907 8.21E-114 dispersed
Cmo01g00167 Cmo-Chr1:721064 Cmo01g01565 Cmo-Chr1:12038282 9.28E-12 transposed
Cmo14g01411 Cmo-Chr14:11546204 Cmo01g01565 Cmo-Chr1:12038282 0 transposed
Cmo17g00840 Cmo-Chr17:7824503 Cmo01g01565 Cmo-Chr1:12038282 0 transposed
Cmo01g01565 Cmo-Chr1:12038282 Cmo09g00454 Cmo-Chr9:2036051 2.29E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g500 . Blo12g01072 . . . . . . . . Cma01g01512 . . . . . . . . . . . . . Cla05g01726 Cam05g1839 Cec05g1853 Cco05g1910 Clacu05g1827 Cmu05g1710 Cre05g1841 . Cone7ag1692 . . Lsi04g02118 Csa03g04322 Chy04g00378 . . . . . . . . . . Cmo01g01565 . . . . . . Cpe02g00444 . . . . . . . . . . . . . . . . . Cme04g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9126 PF10551 MULE 9.20E-24 CL0219 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01565 Cmo_Chr01 FPKM 6.192008 7.008986 7.546223 7.544883 7.51944 7.218189 7.176054 41.05835 40.149536 41.88129