Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01566 ATGAAGCAGAGTATATCTGAGGCAGTATCTTCATCCACCACGGGATTGACGGAGCAATCTCAATCCTCGTCGTCGTCGTCGTCGGCGACGTTGGAGAAGTCCCAATCCATATCGGCTGCGGCGGCGGCGGAGGATTTGGCCGTAGGGTCGAGAGATGGCGGCGGGGCGCAAGAAACGGTGACTGTCGATCGGCGGGGGGATTTCTCTGCCGTGTGTAGATGGACAGTACAAAATTTCCCGAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTCGAGGTCGGAGGTTACGATTGCCGTCTGTTGATATATCCAAAGGGGGATTCCCAAGCGCTACCGGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGCGGTACATCGTCGTCCAAATGGGATTGCTTTGCGAGCTATCGTTTGGCTATCGTCAACGTTCTCGATGATTCGAAGACCGTTCATCGGGATTCTTGGCATCGATTCTCTAGCAAGAAGAAATCTCACGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTTGGCTATTTGTTTAATAATGAGTCCATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCATCGGTTGTTGCTTGCCCTGTGCCTGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAAATGATAAAAACCCAGAAAATAATGAGCCCCGTGTTCCCAGCTGGCGAGTGTAATTTGAGGATTAGCGTCTATCAGAGCTCAGTTAATGGGACTGAGTATTTATCAATGTGTCTAGAGAGCAAGGATACCGAAAAGACGGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTGAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGGTTTGCAGCTGATAATAAGAGTGGGGATAATACCAGTTTGGGGTGGAATGACTACATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGATGATACCGCTGTGTTTAGTACCTCTTTTCATGTGATCAAGGAATTTAGTAGTTTTTCGAAGAATGGTGGATTAATTGGTGGTAGAAATGGGAGTGGAATTAGGAAATCAGATGGTCACCTAGGCAAATTCACGTGGAGGATTGAGAACTTCACAAGGTTGAAGGATCTTTTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTCCAGGTGGGGAATCGAGACTGTCGTCTTATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTCCTTGAAGTTACGGATTCAAGAATCACTTCCAGTGAGTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTTACAAAGGAGTCCCAAAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACTAGCCTCTTTGATCAGGATTCCGGTTTTCTCGTTCAGGATACTGTAATATTCTCAGCAGAGGTTCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGACCAAGACGTGGAGACGACTGGTTCCAGCTCTGTGATGGATAAGGTAGCAAAAAAAAGTTCATTTACATGGAAAGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACCCGTAAAATCTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGCATTGGCGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTTAGATACAAAATGGCCGTGGTGAATCAAAAATATCCAGCAAAAACTGTATGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCAGATATGCTAGAGGCAGATGCGGGGTTTCTTGTACGAGACACGGTGGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCAGATGATCTCATTGATTCTGAAGACAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTCTCTACAGCCGGATTTCATCTAACATATGGAGATAATCCTTCACAACCACAGGTCACTTTGCGAGAAAAACTTTTGATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTGCTTCTTCCTACTAAGCTATCCAGTAGCAACGATGGGAAAAAGGTCTCAAAGACAGATGAGTCTTCCCCCAGTTTAATGAATTTGCTTATGGGAGTCAAAGTTTTACAGCAGGCAATCATTGATTTACTCTTGGATATAATGGTCGAGTGTTGCCAACCTTCAGAAGGGGGCTCTGGGGACCATTTGGAAGCAAATTCGAAGCCTTCCATTCCTAGCAGTGGAGCTACTACTACACCACTGGAAGGTGAAAATGAAAATGAAAATGGAGCAATAGAGACTGCAGATTGTCCTCCATTTCAGAGATTGGATATTGTTGATGAAAGTAGTAGTGCACCTGCTGTACAAAGCTCGGACATGACTAGAACTGATAGGCAGGGCAGGTCTCAACCTGAAGAGCTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAGTGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTGAATTCATTGAGAGCCCTAGATGGGGCTGTCTCCCGAGGATGTCCTGAGCCAAAAAGACGGCCTCAATCCGCACAAAAGATGTCTCTTGTGCTGGATAAAGCTCCCAAGCATCTACAGTCTGACCTGGTTGCACTAGTACCCAAATTAGTTGAGCATTCAGAACATCCTTTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCCGGTGCTGAGCCAGCACTGCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGAGTGTGGTACTGAAGTTTGGGAACAGGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAACTATGGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCAGTGAGATCTGTTCGTGTTAGGCTGAAGAATTTGGGCATGGATGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACAGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGATGATGCTGATGATTTCCACTCAAAGATATCACGTGAGCTTTTCTTATTTGGTGAACCTGGCCCTGCTTCAGAAAGTCTGCATCCGTTGGATGAGCAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCTATACCTTGTCTTGCCGTTGAAGCATCACAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTTGCTGTGGTGTTGAAAAAACGTCTTGCTCAAAAAGCAAATAGCAATGCTAGATTCGTAGCTGAAAGCTTCCAGCATGGAGATTCTGTAATAGATGGTGAACCTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTTCTATTGTTGGTCTTGCCGAAACATTAGCACTCTCTAGAGACCCTTGCGTTAGAGGATTTGTGAAAATGCTTTATCCATCATTGTTTAAGTGGTATGCAAGTGAATCTTATCGAGCCAGGATGCTGAAAAGATTGGTTGACCGTGTCACCAGCAGTGCAGATAATAACCGTGAAGTAGATATGGATTTGGAAATTTTGGTTACGTTGATTGGTGATGAACAAGAAATAATTAGACCTGTGCTAAATATGATGCGGGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAGCTGTTCTTTCACAAAAACTTGGTGAATCTGAAGCCATGATCAATCGCCTAAAGGCTGAGATGAAGGCTGAGATGGAGAGATTTTCTCGCGAGAGAAAGGAACTTTCTGAACAAATGCATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGGTTGTGAAGTTAACATCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGCGCAGTTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTGGTTAAGGAAAAAAATGCACTTGCTGAGAGGTTGAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGACGAACAACTGAAACGGTATGCAAATGAAAATATGACGAGGGAAGAAATCCGGCAGTCATTGGAAGACGAAGTTCGCCGGCTTACACAAACAGTTGGACAGACTGAAGGCGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCTAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAAGAGATGTCCAGACATGCCCCTCTCTATGGTGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTGGAGACATTATCCCGAATTCACGAAGAAGGATTAAGGCAAATCCATACTCTTCAGCAGCGCAAAGGGAGTCCAGCTGGCAGTCCTCTCGTGAGCCCTCATTCCCTCGCTCACAGTCACGGGTTGTACTCTGCAGCACCTCCCCCAATGGCTGTCGGGATGCTTCCTTCACTCATGCCCAATGGCTCAGGGATCCACAGCAATGGACATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5061 44.14 MKQSISEAVSSSTTGLTEQSQSSSSSSSATLEKSQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPVPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGGRNGSGIRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRITSSEWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDVETTGSSSVMDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDDLIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSIPSSGATTTPLEGENENENGAIETADCPPFQRLDIVDESSSAPAVQSSDMTRTDRQGRSQPEELIHPPETSAGVSESVFLRTKTKWPEQSEELLGLIVNSLRALDGAVSRGCPEPKRRPQSAQKMSLVLDKAPKHLQSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATMDFVFKAGAQCQHLSEAVRSVRVRLKNLGMDVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDDDADDFHSKISRELFLFGEPGPASESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLKKRLAQKANSNARFVAESFQHGDSVIDGEPSEQLRVQRDDFTSIVGLAETLALSRDPCVRGFVKMLYPSLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVTLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKAVLSQKLGESEAMINRLKAEMKAEMERFSRERKELSEQMHDIESQLEWLRSERDDEVVKLTSEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLAHSHGLYSAAPPPMAVGMLPSLMPNGSGIHSNGHVNGGAVGPWFNHA 1686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12044374 12053862 + CmoCh01G015660.1 Cmo01g01566 375049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01566 1686 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1685 - -
Cmo01g01566 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 401 559 IPR008974 GO:0005515
Cmo01g01566 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 68 214 IPR008974 GO:0005515
Cmo01g01566 1686 SUPERFAMILY TRAF domain-like 404 545 - -
Cmo01g01566 1686 CDD MATH 236 368 IPR002083 GO:0005515
Cmo01g01566 1686 MobiDBLite consensus disorder prediction 906 943 - -
Cmo01g01566 1686 ProSiteProfiles MATH/TRAF domain profile. 571 695 IPR002083 GO:0005515
Cmo01g01566 1686 SUPERFAMILY TRAF domain-like 70 207 - -
Cmo01g01566 1686 MobiDBLite consensus disorder prediction 907 921 - -
Cmo01g01566 1686 MobiDBLite consensus disorder prediction 1 31 - -
Cmo01g01566 1686 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1685 - -
Cmo01g01566 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 378 IPR008974 GO:0005515
Cmo01g01566 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 560 697 IPR008974 GO:0005515
Cmo01g01566 1686 ProSiteProfiles MATH/TRAF domain profile. 235 372 IPR002083 GO:0005515
Cmo01g01566 1686 Coils Coil 1394 1446 - -
Cmo01g01566 1686 CDD MATH 573 695 IPR002083 GO:0005515
Cmo01g01566 1686 CDD MATH 73 199 IPR002083 GO:0005515
Cmo01g01566 1686 ProSiteProfiles MATH/TRAF domain profile. 69 199 IPR002083 GO:0005515
Cmo01g01566 1686 MobiDBLite consensus disorder prediction 854 891 - -
Cmo01g01566 1686 Pfam MATH domain 77 201 IPR002083 GO:0005515
Cmo01g01566 1686 Pfam MATH domain 584 691 IPR002083 GO:0005515
Cmo01g01566 1686 Pfam MATH domain 435 541 IPR002083 GO:0005515
Cmo01g01566 1686 ProSiteProfiles MATH/TRAF domain profile. 403 539 IPR002083 GO:0005515
Cmo01g01566 1686 SMART math_3 240 353 IPR002083 GO:0005515
Cmo01g01566 1686 SMART math_3 71 179 IPR002083 GO:0005515
Cmo01g01566 1686 SMART math_3 576 676 IPR002083 GO:0005515
Cmo01g01566 1686 SMART math_3 408 520 IPR002083 GO:0005515
Cmo01g01566 1686 MobiDBLite consensus disorder prediction 863 882 - -
Cmo01g01566 1686 SUPERFAMILY TRAF domain-like 233 378 - -
Cmo01g01566 1686 Coils Coil 1458 1566 - -
Cmo01g01566 1686 CDD MATH 404 539 IPR002083 GO:0005515
Cmo01g01566 1686 SUPERFAMILY TRAF domain-like 571 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01566 - - - cmos:111446723 3209.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01566 Cmo09g00453 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01566 Cmo-Chr1:12044374 Cmo02g01231 Cmo-Chr2:7394965 6.39E-07 dispersed
Cmo01g01566 Cmo-Chr1:12044374 Cmo09g00453 Cmo-Chr9:2026604 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01566 Cmo_Chr01 FPKM 8.599244 8.273232 13.313 12.246136 16.681858 19.41367 17.729965 19.609339 20.598679 21.490404