Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01567 ATGAAGAATGTCTGTTGGCCCTACTTTGATCCTGAATTTGATACCCTTCCTGAGAGGATCAATGGCCCAACGGTCTGTATTGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGTGGATAGCTTGAACAAACAAGGTCTCCTTCTTGAGGTGGTTCAGATTTTGACGGATTTGAACCTTTCTATCTCTAAAAGCTACATTTCTTGTGATGCAGGCTGGTTCATGGATGTTTTTCATGTGAAAGATGAGAACAGCCACAAACTTACCGATCAGAAAGTCATCAACTCGATCCAGCAGGCCATTGGTACAACTAAGGGACCTGACAACTCGGCCAAGACCAGAAGCTATGCCGACAGCCTTCTGAAATCTGATAACTCCGGCGAGCATACAGCCATCGAAATGACTGGCACCGACCGGCCCGGTCTCTTTTCCGAGATATCTGCCGCATTGGCTGATCTTCATTGCAACGTTGTGGAGGCTCATGCTTGGAGCCACAATGCTCGTTTGGCCTGCATTGCTTACATTTCAGACCAGTCTACAGACAGTCCCATCGAAGATCCTCACCGGCTCGCCACCATTGAAGAGCATCTCTCCACTGTCCTTAGGGCGGCCACTGCCCCTCTGATCACCAGTTGGGCGCACACACTGCAACAAGAAGTGAAAACATCAGCCACCATAACAACCAATGTTGAGAGGCGGCTTCACCAGCTCTTGCTCTCGGTTAAGGATTATGATTGGACCTCTGAATCCATTTCAAAGAGACGGAAAAGCAATGAAGAGTGGAGGAAGATAACGGTGAGGATTGAAAGCTGTGATCAGAAAGGATATTCCATTGTCAGCATTGAGTGTAAGGATCGGCCAAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATTTTCCATGCTTCCATTAGCTCCAAAGGAGATAATGCTTTTCAGGAGTATTTTATCAGACACGTGAATGGCTACGCCTTGAATTCAGAGAATGACAAGCAAAGGGTGGTAAAGTGCTTAGAGGCAGCTATTGAGCGTCGAGTTTGTGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGACATAACAAGGGTCCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCAATTAATGCATTCTACGTCAAAGACATTTCAGGCAAAGATGTAGACATGGAGATGGTGGAATCCATGAAGAAGGAAATTGGCTCTATTGTCCTTCGAGTCAAGAACGAGACAAGCCCTCCATCCACGCCTCAAATTACCAGGTCTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGATTGAGCGCCTCTCTCACAACTTCATTGCCATCAGGCACTGA 1404 46.79 MKNVCWPYFDPEFDTLPERINGPTVCIDNESMEDCTIVKVDSLNKQGLLLEVVQILTDLNLSISKSYISCDAGWFMDVFHVKDENSHKLTDQKVINSIQQAIGTTKGPDNSAKTRSYADSLLKSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLATIEEHLSTVLRAATAPLITSWAHTLQQEVKTSATITTNVERRLHQLLLSVKDYDWTSESISKRRKSNEEWRKITVRIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKGDNAFQEYFIRHVNGYALNSENDKQRVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKDVDMEMVESMKKEIGSIVLRVKNETSPPSTPQITRSRFSFSDMLKSQIERLSHNFIAIRH 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12055322 12058040 + CmoCh01G015670.1 Cmo01g01567 375050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01567 467 CDD ACT_ACR_2 131 204 - -
Cmo01g01567 467 ProSiteProfiles ACT domain profile. 132 212 IPR002912 -
Cmo01g01567 467 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 464 IPR040217 -
Cmo01g01567 467 ProSiteProfiles ACT domain profile. 357 435 IPR002912 -
Cmo01g01567 467 SUPERFAMILY ACT-like 32 99 IPR045865 -
Cmo01g01567 467 CDD ACT_ACR_3 277 351 - -
Cmo01g01567 467 Pfam ACT domain 357 405 IPR002912 -
Cmo01g01567 467 Pfam ACT domain 132 198 IPR002912 -
Cmo01g01567 467 ProSiteProfiles ACT domain profile. 37 118 IPR002912 -
Cmo01g01567 467 SUPERFAMILY ACT-like 128 202 IPR045865 -
Cmo01g01567 467 SUPERFAMILY ACT-like 354 423 IPR045865 -
Cmo01g01567 467 Gene3D - 128 206 - -
Cmo01g01567 467 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 464 - -
Cmo01g01567 467 Gene3D - 356 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01567 - - - cmax:111480393 899.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01567 Cmo-Chr1:12055322 Cmo07g00643 Cmo-Chr7:2905089 3.39E-141 dispersed
Cmo03g00942 Cmo-Chr3:7116412 Cmo01g01567 Cmo-Chr1:12055322 6.21E-29 dispersed
Cmo03g00943 Cmo-Chr3:7117178 Cmo01g01567 Cmo-Chr1:12055322 2.76E-106 dispersed
Cmo01g01567 Cmo-Chr1:12055322 Cmo09g00452 Cmo-Chr9:2025684 1.30E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01567 Cmo_Chr01 FPKM 2.95435 2.861992 11.262491 11.361318 15.218258 15.137218 15.403314 8.125296 6.895272 7.316714