Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01572 ATGCCACGTCACTGTTCGCCGCCATTTTCAGTTCTAGCTGCATTTTCACTCTGCTATTCCTCTGCTCTATTTCCCCTCTCCCATGGCGGTTCTCAACCTCCCTTCTCTCAAATTCCTTCCATCTCAGAGTGGAGAAATGAAGACTATTATTCTGGTGGGGAGCTTGGTTGGGGAAGTCCTAAGGGGTCTGTTGCTGAAGGGCCTGTAATGGAGCCTGTTGAGCACTCGTTGTTTGTGTTGGCAGCTGAAAGAACTCGAAGAAAAGATCCTCTTAGTGGGTTTCAAGTTTATACTAATGGGTGGAATATCAGTGACCGACATTATTGGGCTTCTGTTAGCTTCACTGCAGCTCCATTGTTTGCTGTTGCTGCAGCCTGGCTCTCGGGGTTCGGCCTTTGCTTATTCGTCGTTTCTCTTTGTTACTTCTGTTGCGAAAAACGCTCATACAGCTATTCTCGAACCGCTTATGCTCTTTCACTTCTCCTCCTCATTATGTTCTCCATTTCAGCAATCATTGGTTGTGTCATTTTATACACTGGACAAGGAAGGTTTCACAATAGTTCATCAAAAACATTGGAATATGTTGTAAGTCAAGCGGATTTCACTGCTCGAAAGCTTCGGGATGTATCGGATTACTTTGCTGCAGCCAAGCAAACCGGAGTCGATCAAGTGTTCTTGCCTTCTGATGTTCAAACCGATATCGATCAAATCGAGATAAAGATCAACTCTTCTGCTAGTGTTCTTGATGAAAAAGCTGTTCATAACTCAAATGACATAAAAGATCTCCTTGATTCTATTCGTCTGGCTCTGATAATCGTGGCGGCGATCATGCTTTTGTTGACGTTTCTTGGATTTTTGTTCTCCATATTTGGTATGCAAGTTCTTGTGTACATCCTGGTGATAACTGGTTGGTTACTTGTCACCGGGACGTTCGTCTTATCTGGCACGTTTCTTGTTCTTCACAATGTGGCTGCAGATACTTGTGTTGCAATGGACCAATGGGTCCAGAATCCGAGCGCCCACACGGCCTTAGACGACATTCTTCCTTGTGTCGATAAAGTGACTGCTCAAGAAACCCTGGTAAAAAGCAAGGAAGTGAGTGCACAACTCGTCGATCTGATCAACGAGGTGATCACCAATGTCTCGAACATAAATTTTTCGCCGAACTTCAAACCGATGTACTTCAACCAATCCGGTCCCGTTATGCCAACGCTCTGTAACCCGTTTCACCATCCGGACTTGACACCGAGAGCTTGCTCTTCCGGTGAAGTAGACTTGCAAAATGCTACACAAGTATGGGGCAGCTATGTCTGCCAAGTTTCGCCTACCGGTGATATATGCATCACGACGGGGCGATTGACTCCGAGCTTATACAGCCAGATGACGAGCGGAGTCAACTTAAGCTATGCGCTATCGAACTACGGTCCTACATTGGTCGAGCTCCAAGACTGCACGTTTGTTCGTCAAACGTTCGATGACATACATAGACAGTACTGTCCTGGTTTACAACAATACAGCAGATGGGTACCTATCTTTCGTGCATTCACAACCGATACCGCTGTGTTAGCCAGCTTGGTTCTATGCTGTTGGTATGCATTGCAGGGAGTTCAAGACGGGACGAGCGACCGGTACGAATGGCGGTTTGGAAACGGAGTCTACGAAAGATCCACCGGCCCGGTGCACCGATCACAGTCGCCGGGCGGACGGTTCTGTAACTCCCCGGCGCTGTCGTCTTTTACGTCGGCGTTTGCTTCATCCACTAGCTTAAACTTTTACTCGCATTCTTCTACTTTCCGTTCCGTTGATCACCGCGATTTCCGCAGCCACCATCATCATCGTCGATGCACCTCCCCTAGCCGTGTTAATGTTTTTTCGTCTCCTTCTCTTACTTCTTCTGTCCGTTTTTTCGTTGATAACCGTTCGATTTCTCCGAATCGGTCCGTTATTGTTTCGAGGAAAAATCATCCGGCGTCTAATGTTAAGAGGACCTGTATGTGCTCTCCGACGACGCATCCAGGATCGTTCCGGTGTAGTTTTCACAAAAACGTCTCGAGTAGCGGCGGCCATAGCCAGACGGTGTCGTTTCCTTCAATCAGGTTAAATATGCGGAGATCGGCTATGGCCAACTCGCTCGTTCGAATCGGCGGTGTGGAAGGAGAGTTGGTGAAGCGAGCATTGACTACTTTGATTCGGCCTTCGTCGCACCAGCAGAGGAGGATAGCGGCATTTATACCTAGATCAAGTCGGCTCGCTGTCATGTCCAAGGTTGACGATGCTTGA 2280 47.63 MPRHCSPPFSVLAAFSLCYSSALFPLSHGGSQPPFSQIPSISEWRNEDYYSGGELGWGSPKGSVAEGPVMEPVEHSLFVLAAERTRRKDPLSGFQVYTNGWNISDRHYWASVSFTAAPLFAVAAAWLSGFGLCLFVVSLCYFCCEKRSYSYSRTAYALSLLLLIMFSISAIIGCVILYTGQGRFHNSSSKTLEYVVSQADFTARKLRDVSDYFAAAKQTGVDQVFLPSDVQTDIDQIEIKINSSASVLDEKAVHNSNDIKDLLDSIRLALIIVAAIMLLLTFLGFLFSIFGMQVLVYILVITGWLLVTGTFVLSGTFLVLHNVAADTCVAMDQWVQNPSAHTALDDILPCVDKVTAQETLVKSKEVSAQLVDLINEVITNVSNINFSPNFKPMYFNQSGPVMPTLCNPFHHPDLTPRACSSGEVDLQNATQVWGSYVCQVSPTGDICITTGRLTPSLYSQMTSGVNLSYALSNYGPTLVELQDCTFVRQTFDDIHRQYCPGLQQYSRWVPIFRAFTTDTAVLASLVLCCWYALQGVQDGTSDRYEWRFGNGVYERSTGPVHRSQSPGGRFCNSPALSSFTSAFASSTSLNFYSHSSTFRSVDHRDFRSHHHHRRCTSPSRVNVFSSPSLTSSVRFFVDNRSISPNRSVIVSRKNHPASNVKRTCMCSPTTHPGSFRCSFHKNVSSSGGHSQTVSFPSIRLNMRRSAMANSLVRIGGVEGELVKRALTTLIRPSSHQQRRIAAFIPRSSRLAVMSKVDDA 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12085912 12091931 + CmoCh01G015720.1 Cmo01g01572 375055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01572 759 PANTHER TRANSMEMBRANE PROTEIN 67 532 - -
Cmo01g01572 759 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 67 532 IPR040283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01572 - - - csv:101218626 863.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01572 Cmo-Chr1:12085912 Cmo10g00536 Cmo-Chr10:2421170 0 dispersed
Cmo11g00499 Cmo-Chr11:2411797 Cmo01g01572 Cmo-Chr1:12085912 1.06E-49 dispersed
Cmo12g01177 Cmo-Chr12:10652024 Cmo01g01572 Cmo-Chr1:12085912 7.50E-46 dispersed
Cmo14g01399 Cmo-Chr14:11487278 Cmo01g01572 Cmo-Chr1:12085912 2.17E-29 dispersed
Cmo14g01452 Cmo-Chr14:11795271 Cmo01g01572 Cmo-Chr1:12085912 5.12E-33 dispersed
Cmo01g01572 Cmo-Chr1:12085912 Cmo11g00497 Cmo-Chr11:2403443 0 wgd
Cmo01g01572 Cmo-Chr1:12085912 Cmo12g00298 Cmo-Chr12:1876490 2.12E-44 wgd
Cmo01g01572 Cmo-Chr1:12085912 Cmo09g00441 Cmo-Chr9:1984221 1.97E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g548 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01713 Cam05g1828 Cec05g1840 Cco05g1898 Clacu05g1814 Cmu05g1699 Cre05g1828 . . . . Lsi04g02106 . . . . . . . . . . . . Cmo01g01572 . . . . . . Cpe02g00437 Bhi09g02945 . . . . . . . . . . . . . . . . Cme07g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011124 1 4 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01572 Cmo_Chr01 FPKM 10.189702 11.742222 22.138494 22.682899 15.280471 14.252257 22.266771 8.757824 5.852557 9.637981