Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01578 | ATGAGTACGGAAAACGTTGCTTTTGAAGTTGAAGAGTGCTCTGTCCGGATCACAAGGGCACGGGCAAAAGAGCTTAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCACTTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGATTTGTTCAATCTCTTCCAATGGCCTTCCTATTAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGGTCTGATAAGAATTGCGGCAATGCTTCTAATGTTCGGGGTGCCAAACCAACTAGAAGAGTTTCTGCGAAGGCTAAGGAAAATGCACCTTTAAATGTTTCTGTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCGGAGGATTTATCTAAAGTAAGGGTGGTAGAATCACAAGAGGTCTCTTCACGAGGAACTTCAGACAAAAAAGAGAGAACAGTGCAAGCCATGTGTCCCAATAGCAGAGACTGTGGAGTTTCAGATATTACTCTCTCTGTATCTTCAGATGAATCTGTCCCTCAGCCAAATGAAAAAAATATGGCACCTGAACAATCGGCAGCATCTAAGGATAGAGGCATTATAAACATTGATTCGGACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGCGTGGCGGAGCTTGATCAAAGGACCTCAACAAACTATATGGAACAGTTGCAGCAAGATATCACTGAAAAAATGCGAGGAATACTGATTGATTGGATTGTAGAGGTCACTGAAGAATATAAGCTGGTTCCAGATACACTCTATCTCACTGTGAATATTATTGATCGGTTTCTCTCGCAAAATCATATGGAGAAAAAACGTCTGCAACTTTTAGGTGTTGCATGTATGCTAATTGCATCGAAATATGAGGAGATCTGTGCACCGAGAGTGGAAGATTTCTGCTTCATTACTGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACCAACTGCATTTTCGTCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCACTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGAGTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCAGATCATCCTTGGAATCCAACTCTAGAGCACTATACATGTTACAACGCTTCTGAGCTGAAAACTGTAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGGTTCCTCGCTAAATGCCATACGTGAGAAGTATAAACACCCCAAGTTCAAATGCGTAGCGAAACTAACATCTACTCGATCGCTTCTATCGCCATCGACCTCTCTTCTCTCTGCAATTTTTGATCTGGTGGTTACTTTCTCTCGCTGGCACTGCGCTCGCCTTCTACGGATCGTGCTGTATCGGATGATTTATACAACAGTAGGCTTTGAGGTTGTCTCGAGTGTATGCCATACTCTCATTCCTGGAGGCAATACTGTCAGTCTCACCTCGAGGATGTGCCCCAAATGCGTTTTGGAGCATGGAGTTTGTCTGGTCAACAATCTCATTTCTGAGAAATATTCAATGCAAGGAATGCTAAGGACTGGAAACATGCTGAGAACTGCAGAAGGATTGCTGTCACTTCCTGTGAAGCGCAAGGCATCGAGTGAGCCTTTTAACTCTCTCTCACAGCAGGCTTCATTGCATAATAAGCGAGTTGCACAGATGGAACCTCGATCATGGTTGCAACAAGTATCTGGATTAGCCAAAAGACCTCCTTTACAAATACCAAAGAATGTCCCAGCTCCCACATCGATGCATTTCCCTGCAGGAACTAAGAGAAAGGTACAGCAAATAGAATCACATCCAACTAAAGTTGTACATCAACGTTCCACTGCTCCCAAATGCCAGAGTGCTCCACTGACTCCAACTTCCAAAATGCAAAATGAGCCGACTGGGTCTGTGAGATCAAAGATGAGGGAATCCTTGGCTGCTGCATTAGCCTTGGTATCGCAGCAGCAAAACAAATCTTCTAATGATGAAAAAAATCCTTTAACTGAGGCTGAGAAGTCTGCAACTCAAATGCAGGAAAATGCTTTAGCGTCTGATCCAGCTATTATTGTTCATGTATCTGATGACTCGAAGAACATCTTTTCCGAGAAGTTAGATTCTGTTGGTCTTGAAGATAATGTAGGAAGGATGTTAGATAAGAATTTGCTGTGTGTAAATGATAGCGATTTAGAGACATTAGGATATGGTGGACGAGTCTTTCAACCAAATAATATTTTGTCTTATGAAGATATTTCTTTTGGGGATAACTTTTTTATTAAAGATGATCTTTTGCAAGAAAATTCTCTCTCTTGGGTACTGGAAGCTGATGTAGGGCTAGCTGATAAAAAGGAAATCAGAACTGATGAACTTCAGAAGATTGATGTTGGTATAGCAAATCAAAACCAAGGATCAAAACCAGTACAGAGTCCTGAGTCTTTGGCATTTAAAATGGAAGAAGAATTATTTAAATTATTTAGTGGTGTTAATAAAAAGTACAAGGAGAAAGGAAGATCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCCGAGCTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCAGAAAGATTATGTTCCATGACTGCCGAGGAACTTGCATCTAAGGAGCTTTCTGAGTGGAGAATGGCCAAGGCTGAAGAACTTGCACAAATGGTAGTTTTACCCAACTCAGAAGTTGATATCAGACGTTTGGTAAGGAAGACGCATAAAGGTGAGTTTCAAGTAGAAGTTGAAGAATACGATAATGCCTCTATCGATGTTTCATCTGGGGTTTCTACGTTTTCTCATAGTCAACGTAATAAGAATGAGACTGTTGGTGGATCACCTGATGAACCTGATACAATTATGGACGAGTGGAATATTTCTGGCCAGAAAAGTGGTGCATCTGACAAGGATGAGTACACCTTTACAATTGCATCGACTGAAGGGTCTGAATTATTGTCACTGCCTCCGATCTCCTCCATAGATGAGTTTATGGAATCCTTTGATACAGAGCCACCTTTCAATATTTTATCTGAAGGTACTGGTAAATTGTCTCCTATTTTGGAGAAGGGTGAGCCAGAGCCTGGCTCTCAGTTGAAGGCTGCAGCTCATTCTATGGAAGGCGCAACTGATGTTAGTATAGACAAAAATGAAAATATTGAGTCTTATACAAAAGCAGACATTGGCTCGTCTTCTATTATCCACATGGATTTGACATCTAGTGATTGTAAAACTGATGAGGACTTGAATGAAAATCAAGCTGGGTTAAGAACATCTGACAGGAATGATGGTACAATATCTGGTGATAGTAATGCAAAATCTGGGACAGAGTCTTTGGCCAGCACATTTAGTGTAGAATATTTATGGGATGGCATCCTCCAGTATAATATTTCGACAATGACTCCGGTCGTGGGTACCTACATAAGTGGTGAAAAAACGTCAGCGAAAGACTGGCCTAGCACTCTTGAGATCAAAGGAAGAGTTAGATTGGATGCATTTGAGAAGTTCCTTCAAGAGCTTCCATTATCTCGTAGTCGAGCCGTTATGGTTCTTCATTTGGATTTAAAGAAAGGTTGCCCGGAAAGCGACCGAGCAAATCTTCAAGAGGTGGCGGAGTCGTATGTCGCCGATGAGCGAGTTGGTATAGCGGAGCCTGGTTCTGGGGTGGAATTTTATTTTTGCTCTCCACACGGACGGATTCTTGAAATGGTTGGCAGGATCCTTCTAAAGGAAAATAATGAGTTACTTAATTCAATTGAAAATGGCCTAATAGGCGTCGTTGTATGGAGAAAACCTCAATTAACTTTAATGTCACCAAACTCAACGTCACTCCACAAACGCAGTTCAAAAAAGCAACATTTTAGCTCTAGAAGACTGCAGGAGACACCAAACTTGAAAGCTAATGATGTTTCCCCTATGCCTCGAGGCTATTTTCCCATCGCCAGCGATTATCCTCTGACTGAGGAGGATGATGCTGATGGCGACGATGATGTCCCGCCTGGCTTTGGCCCGTCAACTACTCGGGATGACGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAACTGCAAACCCTCCTCCCCAAGGACTGTCTAGGCTGCCCTCATTTCAGCCAATTTCCCGAACTTGGTCTCGGCCTGTAGAGAAAATGCGAGAGATTGTGCAAAAATATGGGCAAAGTGAAAATGCCACTAGCGGAAACTGGCAAGAAAGGGGCTTCAGTTCAGTACCCATCCAGTCGTGGAATGATGACGATGATGATGACGACGACATCCCGGAATGGCAACCACAAGCAGCAGCAGCGTCAAGGCATCGAATGCCTCCTCCCTTGCACTTGCAGCAGCCTGTGCGCAGGCTTGGGCAGCCATCGCTGAGGCCTCACTATGTGGTGAACCAACAACAGCAGCAGCATCATCTGGGGCAGTTGTCCCAGTTGGGTGCTAACCAGCAGACCGTGGGGGGCCGCCTCCCCTTAAATGCAAATCAACAAGGGACATGGTGGGTTCCTCAGCAAGGCCACAACAGCAACCCCATCAATATACATTCTTTTAGCAATTTAGGTGGTAGTCATAGTGGTAGTGGTCAGTTTTATGGAGCATTTGGGCGATCAGCGCCTTCCAACCCTTCAAATAATAGAGGGTTTTGA | 4809 | 43.07 | MSTENVAFEVEECSVRITRARAKELSESGGILCSSKSSGVQKPLLRANSKRMASDDIKICSISSNGLPIKRRAVLKDVTNISTKGSDKNCGNASNVRGAKPTRRVSAKAKENAPLNVSVGAEEDANTRLAEDLSKVRVVESQEVSSRGTSDKKERTVQAMCPNSRDCGVSDITLSVSSDESVPQPNEKNMAPEQSAASKDRGIINIDSDSKCLQSCSIYAPDIYDRIRVAELDQRTSTNYMEQLQQDITEKMRGILIDWIVEVTEEYKLVPDTLYLTVNIIDRFLSQNHMEKKRLQLLGVACMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNQLHFRLSVPTTKTFLRRFIQSAHASYKVPCTELEFLANYLAELSLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQLNTSGSSLNAIREKYKHPKFKCVAKLTSTRSLLSPSTSLLSAIFDLVVTFSRWHCARLLRIVLYRMIYTTVGFEVVSSVCHTLIPGGNTVSLTSRMCPKCVLEHGVCLVNNLISEKYSMQGMLRTGNMLRTAEGLLSLPVKRKASSEPFNSLSQQASLHNKRVAQMEPRSWLQQVSGLAKRPPLQIPKNVPAPTSMHFPAGTKRKVQQIESHPTKVVHQRSTAPKCQSAPLTPTSKMQNEPTGSVRSKMRESLAAALALVSQQQNKSSNDEKNPLTEAEKSATQMQENALASDPAIIVHVSDDSKNIFSEKLDSVGLEDNVGRMLDKNLLCVNDSDLETLGYGGRVFQPNNILSYEDISFGDNFFIKDDLLQENSLSWVLEADVGLADKKEIRTDELQKIDVGIANQNQGSKPVQSPESLAFKMEEELFKLFSGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEELAQMVVLPNSEVDIRRLVRKTHKGEFQVEVEEYDNASIDVSSGVSTFSHSQRNKNETVGGSPDEPDTIMDEWNISGQKSGASDKDEYTFTIASTEGSELLSLPPISSIDEFMESFDTEPPFNILSEGTGKLSPILEKGEPEPGSQLKAAAHSMEGATDVSIDKNENIESYTKADIGSSSIIHMDLTSSDCKTDEDLNENQAGLRTSDRNDGTISGDSNAKSGTESLASTFSVEYLWDGILQYNISTMTPVVGTYISGEKTSAKDWPSTLEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDLKKGCPESDRANLQEVAESYVADERVGIAEPGSGVEFYFCSPHGRILEMVGRILLKENNELLNSIENGLIGVVVWRKPQLTLMSPNSTSLHKRSSKKQHFSSRRLQETPNLKANDVSPMPRGYFPIASDYPLTEEDDADGDDDVPPGFGPSTTRDDDDLPEFNFSGSATANPPPQGLSRLPSFQPISRTWSRPVEKMREIVQKYGQSENATSGNWQERGFSSVPIQSWNDDDDDDDDIPEWQPQAAAASRHRMPPPLHLQQPVRRLGQPSLRPHYVVNQQQQQHHLGQLSQLGANQQTVGGRLPLNANQQGTWWVPQQGHNSNPINIHSFSNLGGSHSGSGQFYGAFGRSAPSNPSNNRGF | 1602 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12108486 | 12123248 | + | CmoCh01G015780.1 | Cmo01g01578 | 375061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01578 | 1602 | CDD | CYCLIN | 252 | 341 | IPR013763 | - | |
Cmo01g01578 | 1602 | CDD | CYCLIN | 349 | 441 | IPR013763 | - | |
Cmo01g01578 | 1602 | SMART | cyclin_7 | 355 | 443 | IPR013763 | - | |
Cmo01g01578 | 1602 | SMART | cyclin_7 | 258 | 342 | IPR013763 | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1140 | 1163 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1449 | 1500 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 176 | 200 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 657 | 691 | - | - | |
Cmo01g01578 | 1602 | SMART | mid_6 | 814 | 936 | IPR003618 | GO:0006351 | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 176 | 193 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 984 | 1000 | - | - | |
Cmo01g01578 | 1602 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 572 | 1577 | - | - | |
Cmo01g01578 | 1602 | PANTHER | SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN | 572 | 1577 | - | - | |
Cmo01g01578 | 1602 | Gene3D | - | 832 | 928 | IPR036575 | GO:0006351 | |
Cmo01g01578 | 1602 | Pfam | SPOC domain | 1173 | 1316 | IPR012921 | - | |
Cmo01g01578 | 1602 | ProSitePatterns | Cyclins signature. | 253 | 284 | IPR006671 | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 652 | 693 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1142 | 1163 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 984 | 1007 | - | - | |
Cmo01g01578 | 1602 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 858 | 929 | IPR036575 | GO:0006351 | |
Cmo01g01578 | 1602 | Gene3D | - | 222 | 470 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1058 | 1101 | - | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1449 | 1468 | - | - | |
Cmo01g01578 | 1602 | Pfam | Cyclin, N-terminal domain | 222 | 349 | IPR006671 | - | |
Cmo01g01578 | 1602 | SUPERFAMILY | Cyclin-like | 214 | 348 | IPR036915 | - | |
Cmo01g01578 | 1602 | SMART | Cyclin_C_2 | 351 | 474 | IPR004367 | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 86 | 111 | - | - | |
Cmo01g01578 | 1602 | ProSiteProfiles | TFIIS central domain profile. | 837 | 953 | IPR003618 | GO:0006351 | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1325 | 1425 | - | - | |
Cmo01g01578 | 1602 | SUPERFAMILY | Cyclin-like | 350 | 473 | IPR036915 | - | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 705 | 731 | - | - | |
Cmo01g01578 | 1602 | Pfam | Transcription factor S-II (TFIIS), central domain | 843 | 941 | IPR003618 | GO:0006351 | |
Cmo01g01578 | 1602 | MobiDBLite | consensus disorder prediction | 1405 | 1425 | - | - | |
Cmo01g01578 | 1602 | Gene3D | - | 236 | 349 | - | - | |
Cmo01g01578 | 1602 | Pfam | Cyclin, C-terminal domain | 351 | 473 | IPR004367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01578 | Cmo-Chr1:12108486 | Cmo17g00798 | Cmo-Chr17:7649458 | 1.60E-131 | dispersed | |
Cmo15g00182 | Cmo-Chr15:839088 | Cmo01g01578 | Cmo-Chr1:12108486 | 2.40E-08 | dispersed | |
Cmo09g00484 | Cmo-Chr9:2191599 | Cmo01g01578 | Cmo-Chr1:12108486 | 0 | transposed | |
Cmo01g01578 | Cmo-Chr1:12108486 | Cmo12g00256 | Cmo-Chr12:1659706 | 9.42E-121 | wgd | |
Cmo01g01578 | Cmo-Chr1:12108486 | Cmo08g00616 | Cmo-Chr8:3755573 | 3.91E-120 | wgd | |
Cmo01g01578 | Cmo-Chr1:12108486 | Cmo09g00483 | Cmo-Chr9:2184891 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01578 | - | - | cmos:111446206 | 2007.65 |