Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01578 ATGAGTACGGAAAACGTTGCTTTTGAAGTTGAAGAGTGCTCTGTCCGGATCACAAGGGCACGGGCAAAAGAGCTTAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCACTTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGATTTGTTCAATCTCTTCCAATGGCCTTCCTATTAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGGTCTGATAAGAATTGCGGCAATGCTTCTAATGTTCGGGGTGCCAAACCAACTAGAAGAGTTTCTGCGAAGGCTAAGGAAAATGCACCTTTAAATGTTTCTGTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCGGAGGATTTATCTAAAGTAAGGGTGGTAGAATCACAAGAGGTCTCTTCACGAGGAACTTCAGACAAAAAAGAGAGAACAGTGCAAGCCATGTGTCCCAATAGCAGAGACTGTGGAGTTTCAGATATTACTCTCTCTGTATCTTCAGATGAATCTGTCCCTCAGCCAAATGAAAAAAATATGGCACCTGAACAATCGGCAGCATCTAAGGATAGAGGCATTATAAACATTGATTCGGACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGCGTGGCGGAGCTTGATCAAAGGACCTCAACAAACTATATGGAACAGTTGCAGCAAGATATCACTGAAAAAATGCGAGGAATACTGATTGATTGGATTGTAGAGGTCACTGAAGAATATAAGCTGGTTCCAGATACACTCTATCTCACTGTGAATATTATTGATCGGTTTCTCTCGCAAAATCATATGGAGAAAAAACGTCTGCAACTTTTAGGTGTTGCATGTATGCTAATTGCATCGAAATATGAGGAGATCTGTGCACCGAGAGTGGAAGATTTCTGCTTCATTACTGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACCAACTGCATTTTCGTCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCACTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGAGTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCAGATCATCCTTGGAATCCAACTCTAGAGCACTATACATGTTACAACGCTTCTGAGCTGAAAACTGTAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGGTTCCTCGCTAAATGCCATACGTGAGAAGTATAAACACCCCAAGTTCAAATGCGTAGCGAAACTAACATCTACTCGATCGCTTCTATCGCCATCGACCTCTCTTCTCTCTGCAATTTTTGATCTGGTGGTTACTTTCTCTCGCTGGCACTGCGCTCGCCTTCTACGGATCGTGCTGTATCGGATGATTTATACAACAGTAGGCTTTGAGGTTGTCTCGAGTGTATGCCATACTCTCATTCCTGGAGGCAATACTGTCAGTCTCACCTCGAGGATGTGCCCCAAATGCGTTTTGGAGCATGGAGTTTGTCTGGTCAACAATCTCATTTCTGAGAAATATTCAATGCAAGGAATGCTAAGGACTGGAAACATGCTGAGAACTGCAGAAGGATTGCTGTCACTTCCTGTGAAGCGCAAGGCATCGAGTGAGCCTTTTAACTCTCTCTCACAGCAGGCTTCATTGCATAATAAGCGAGTTGCACAGATGGAACCTCGATCATGGTTGCAACAAGTATCTGGATTAGCCAAAAGACCTCCTTTACAAATACCAAAGAATGTCCCAGCTCCCACATCGATGCATTTCCCTGCAGGAACTAAGAGAAAGGTACAGCAAATAGAATCACATCCAACTAAAGTTGTACATCAACGTTCCACTGCTCCCAAATGCCAGAGTGCTCCACTGACTCCAACTTCCAAAATGCAAAATGAGCCGACTGGGTCTGTGAGATCAAAGATGAGGGAATCCTTGGCTGCTGCATTAGCCTTGGTATCGCAGCAGCAAAACAAATCTTCTAATGATGAAAAAAATCCTTTAACTGAGGCTGAGAAGTCTGCAACTCAAATGCAGGAAAATGCTTTAGCGTCTGATCCAGCTATTATTGTTCATGTATCTGATGACTCGAAGAACATCTTTTCCGAGAAGTTAGATTCTGTTGGTCTTGAAGATAATGTAGGAAGGATGTTAGATAAGAATTTGCTGTGTGTAAATGATAGCGATTTAGAGACATTAGGATATGGTGGACGAGTCTTTCAACCAAATAATATTTTGTCTTATGAAGATATTTCTTTTGGGGATAACTTTTTTATTAAAGATGATCTTTTGCAAGAAAATTCTCTCTCTTGGGTACTGGAAGCTGATGTAGGGCTAGCTGATAAAAAGGAAATCAGAACTGATGAACTTCAGAAGATTGATGTTGGTATAGCAAATCAAAACCAAGGATCAAAACCAGTACAGAGTCCTGAGTCTTTGGCATTTAAAATGGAAGAAGAATTATTTAAATTATTTAGTGGTGTTAATAAAAAGTACAAGGAGAAAGGAAGATCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCCGAGCTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCAGAAAGATTATGTTCCATGACTGCCGAGGAACTTGCATCTAAGGAGCTTTCTGAGTGGAGAATGGCCAAGGCTGAAGAACTTGCACAAATGGTAGTTTTACCCAACTCAGAAGTTGATATCAGACGTTTGGTAAGGAAGACGCATAAAGGTGAGTTTCAAGTAGAAGTTGAAGAATACGATAATGCCTCTATCGATGTTTCATCTGGGGTTTCTACGTTTTCTCATAGTCAACGTAATAAGAATGAGACTGTTGGTGGATCACCTGATGAACCTGATACAATTATGGACGAGTGGAATATTTCTGGCCAGAAAAGTGGTGCATCTGACAAGGATGAGTACACCTTTACAATTGCATCGACTGAAGGGTCTGAATTATTGTCACTGCCTCCGATCTCCTCCATAGATGAGTTTATGGAATCCTTTGATACAGAGCCACCTTTCAATATTTTATCTGAAGGTACTGGTAAATTGTCTCCTATTTTGGAGAAGGGTGAGCCAGAGCCTGGCTCTCAGTTGAAGGCTGCAGCTCATTCTATGGAAGGCGCAACTGATGTTAGTATAGACAAAAATGAAAATATTGAGTCTTATACAAAAGCAGACATTGGCTCGTCTTCTATTATCCACATGGATTTGACATCTAGTGATTGTAAAACTGATGAGGACTTGAATGAAAATCAAGCTGGGTTAAGAACATCTGACAGGAATGATGGTACAATATCTGGTGATAGTAATGCAAAATCTGGGACAGAGTCTTTGGCCAGCACATTTAGTGTAGAATATTTATGGGATGGCATCCTCCAGTATAATATTTCGACAATGACTCCGGTCGTGGGTACCTACATAAGTGGTGAAAAAACGTCAGCGAAAGACTGGCCTAGCACTCTTGAGATCAAAGGAAGAGTTAGATTGGATGCATTTGAGAAGTTCCTTCAAGAGCTTCCATTATCTCGTAGTCGAGCCGTTATGGTTCTTCATTTGGATTTAAAGAAAGGTTGCCCGGAAAGCGACCGAGCAAATCTTCAAGAGGTGGCGGAGTCGTATGTCGCCGATGAGCGAGTTGGTATAGCGGAGCCTGGTTCTGGGGTGGAATTTTATTTTTGCTCTCCACACGGACGGATTCTTGAAATGGTTGGCAGGATCCTTCTAAAGGAAAATAATGAGTTACTTAATTCAATTGAAAATGGCCTAATAGGCGTCGTTGTATGGAGAAAACCTCAATTAACTTTAATGTCACCAAACTCAACGTCACTCCACAAACGCAGTTCAAAAAAGCAACATTTTAGCTCTAGAAGACTGCAGGAGACACCAAACTTGAAAGCTAATGATGTTTCCCCTATGCCTCGAGGCTATTTTCCCATCGCCAGCGATTATCCTCTGACTGAGGAGGATGATGCTGATGGCGACGATGATGTCCCGCCTGGCTTTGGCCCGTCAACTACTCGGGATGACGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAACTGCAAACCCTCCTCCCCAAGGACTGTCTAGGCTGCCCTCATTTCAGCCAATTTCCCGAACTTGGTCTCGGCCTGTAGAGAAAATGCGAGAGATTGTGCAAAAATATGGGCAAAGTGAAAATGCCACTAGCGGAAACTGGCAAGAAAGGGGCTTCAGTTCAGTACCCATCCAGTCGTGGAATGATGACGATGATGATGACGACGACATCCCGGAATGGCAACCACAAGCAGCAGCAGCGTCAAGGCATCGAATGCCTCCTCCCTTGCACTTGCAGCAGCCTGTGCGCAGGCTTGGGCAGCCATCGCTGAGGCCTCACTATGTGGTGAACCAACAACAGCAGCAGCATCATCTGGGGCAGTTGTCCCAGTTGGGTGCTAACCAGCAGACCGTGGGGGGCCGCCTCCCCTTAAATGCAAATCAACAAGGGACATGGTGGGTTCCTCAGCAAGGCCACAACAGCAACCCCATCAATATACATTCTTTTAGCAATTTAGGTGGTAGTCATAGTGGTAGTGGTCAGTTTTATGGAGCATTTGGGCGATCAGCGCCTTCCAACCCTTCAAATAATAGAGGGTTTTGA 4809 43.07 MSTENVAFEVEECSVRITRARAKELSESGGILCSSKSSGVQKPLLRANSKRMASDDIKICSISSNGLPIKRRAVLKDVTNISTKGSDKNCGNASNVRGAKPTRRVSAKAKENAPLNVSVGAEEDANTRLAEDLSKVRVVESQEVSSRGTSDKKERTVQAMCPNSRDCGVSDITLSVSSDESVPQPNEKNMAPEQSAASKDRGIINIDSDSKCLQSCSIYAPDIYDRIRVAELDQRTSTNYMEQLQQDITEKMRGILIDWIVEVTEEYKLVPDTLYLTVNIIDRFLSQNHMEKKRLQLLGVACMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNQLHFRLSVPTTKTFLRRFIQSAHASYKVPCTELEFLANYLAELSLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQLNTSGSSLNAIREKYKHPKFKCVAKLTSTRSLLSPSTSLLSAIFDLVVTFSRWHCARLLRIVLYRMIYTTVGFEVVSSVCHTLIPGGNTVSLTSRMCPKCVLEHGVCLVNNLISEKYSMQGMLRTGNMLRTAEGLLSLPVKRKASSEPFNSLSQQASLHNKRVAQMEPRSWLQQVSGLAKRPPLQIPKNVPAPTSMHFPAGTKRKVQQIESHPTKVVHQRSTAPKCQSAPLTPTSKMQNEPTGSVRSKMRESLAAALALVSQQQNKSSNDEKNPLTEAEKSATQMQENALASDPAIIVHVSDDSKNIFSEKLDSVGLEDNVGRMLDKNLLCVNDSDLETLGYGGRVFQPNNILSYEDISFGDNFFIKDDLLQENSLSWVLEADVGLADKKEIRTDELQKIDVGIANQNQGSKPVQSPESLAFKMEEELFKLFSGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEELAQMVVLPNSEVDIRRLVRKTHKGEFQVEVEEYDNASIDVSSGVSTFSHSQRNKNETVGGSPDEPDTIMDEWNISGQKSGASDKDEYTFTIASTEGSELLSLPPISSIDEFMESFDTEPPFNILSEGTGKLSPILEKGEPEPGSQLKAAAHSMEGATDVSIDKNENIESYTKADIGSSSIIHMDLTSSDCKTDEDLNENQAGLRTSDRNDGTISGDSNAKSGTESLASTFSVEYLWDGILQYNISTMTPVVGTYISGEKTSAKDWPSTLEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDLKKGCPESDRANLQEVAESYVADERVGIAEPGSGVEFYFCSPHGRILEMVGRILLKENNELLNSIENGLIGVVVWRKPQLTLMSPNSTSLHKRSSKKQHFSSRRLQETPNLKANDVSPMPRGYFPIASDYPLTEEDDADGDDDVPPGFGPSTTRDDDDLPEFNFSGSATANPPPQGLSRLPSFQPISRTWSRPVEKMREIVQKYGQSENATSGNWQERGFSSVPIQSWNDDDDDDDDIPEWQPQAAAASRHRMPPPLHLQQPVRRLGQPSLRPHYVVNQQQQQHHLGQLSQLGANQQTVGGRLPLNANQQGTWWVPQQGHNSNPINIHSFSNLGGSHSGSGQFYGAFGRSAPSNPSNNRGF 1602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12108486 12123248 + CmoCh01G015780.1 Cmo01g01578 375061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01578 1602 CDD CYCLIN 252 341 IPR013763 -
Cmo01g01578 1602 CDD CYCLIN 349 441 IPR013763 -
Cmo01g01578 1602 SMART cyclin_7 355 443 IPR013763 -
Cmo01g01578 1602 SMART cyclin_7 258 342 IPR013763 -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1140 1163 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1449 1500 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 176 200 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 657 691 - -
Cmo01g01578 1602 SMART mid_6 814 936 IPR003618 GO:0006351
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 176 193 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 984 1000 - -
Cmo01g01578 1602 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 572 1577 - -
Cmo01g01578 1602 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 572 1577 - -
Cmo01g01578 1602 Gene3D - 832 928 IPR036575 GO:0006351
Cmo01g01578 1602 Pfam SPOC domain 1173 1316 IPR012921 -
Cmo01g01578 1602 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 652 693 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1142 1163 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 984 1007 - -
Cmo01g01578 1602 SUPERFAMILY Elongation factor TFIIS domain 2 858 929 IPR036575 GO:0006351
Cmo01g01578 1602 Gene3D - 222 470 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1058 1101 - -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1449 1468 - -
Cmo01g01578 1602 Pfam Cyclin, N-terminal domain 222 349 IPR006671 -
Cmo01g01578 1602 SUPERFAMILY Cyclin-like 214 348 IPR036915 -
Cmo01g01578 1602 SMART Cyclin_C_2 351 474 IPR004367 -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 86 111 - -
Cmo01g01578 1602 ProSiteProfiles TFIIS central domain profile. 837 953 IPR003618 GO:0006351
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1325 1425 - -
Cmo01g01578 1602 SUPERFAMILY Cyclin-like 350 473 IPR036915 -
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 705 731 - -
Cmo01g01578 1602 Pfam Transcription factor S-II (TFIIS), central domain 843 941 IPR003618 GO:0006351
Cmo01g01578 1602 MobiDBLite consensus disorder prediction 1405 1425 - -
Cmo01g01578 1602 Gene3D - 236 349 - -
Cmo01g01578 1602 Pfam Cyclin, C-terminal domain 351 473 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01578 Cmo-Chr1:12108486 Cmo17g00798 Cmo-Chr17:7649458 1.60E-131 dispersed
Cmo15g00182 Cmo-Chr15:839088 Cmo01g01578 Cmo-Chr1:12108486 2.40E-08 dispersed
Cmo09g00484 Cmo-Chr9:2191599 Cmo01g01578 Cmo-Chr1:12108486 0 transposed
Cmo01g01578 Cmo-Chr1:12108486 Cmo12g00256 Cmo-Chr12:1659706 9.42E-121 wgd
Cmo01g01578 Cmo-Chr1:12108486 Cmo08g00616 Cmo-Chr8:3755573 3.91E-120 wgd
Cmo01g01578 Cmo-Chr1:12108486 Cmo09g00483 Cmo-Chr9:2184891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01578 - - cmos:111446206 2007.65