Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01592 ATGTCGATGCCGTCGCCGTTGCCTTTTCTCATCCGGCGGCACTCAAGTGACGATTTAAAGAACTTGACATCGGTTTCCAGCAGCCTCTTGCCCGCTTTTGGAACGGTAGTGAATGGTGGATACACGCACCTGAATAAATTCGTGGTAGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGTTAGTGGTGTACTCTGCGTGGGCATCTCCCTTTGAGCTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATCTGTTGGTGGATGCATTCTTTGCCCTTGATATCGTGTTGACCTTCTTCGTCGCGTACTTGGATAAATCCACCTATCTCCTCGTTGACGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTACAGGCACTACACAGAATTTTGACTGGAAAGATGTACCGCAGTGACGCCTTCGGTTTCCTCAATTTACTTCGGTTCTGGCGACTAAGACGTGTTGGTGAGCTCTTCACAAGGTTGGAGAAAGACATACGCTTTAGTTACTTCTTAACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTATTGGCTAGCAGTTCATCATAAAGAGCCAGGAAATACATGGATTGGAGTTGAAGTTGAAGATTTTGAGAACAGGAATATCTGGGTTGGGTACACGTATTCGATATATTGGTCCATTGTCACACTTACTACCGTCGGTTATGGCGACTTGCATGCAGTTAATTTAGGGGAGAAGCTTTTTAGCATCTGCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATCGGAAACATGACAAATCTCATTGTTCATGGTGCTGTCCGAACATATATCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCGATCAGATCCAGTATTGCCCAGCACCTTTTCGGACAAACAGTTGAGAGTGCGTACTTATTCAAGGGGATCTCTGACGATCTCATCGTTCAATTGGTATCTGCGATGAAAGCAGAGTACTTTCCACCTAAACTTGATATCATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATATGATATCGTACAAGAATGGAAATGAACAGGTTTTGGCAAATCTGGAATCTCCACAAATGGCAGGGGAAATAGCTGTGATGTTGAATATTCCACAGCCATTTACAGTGAGGACTAAAAGACTCTCCCAAGTCATCAGGATCAGTCACCATCATTTTAAGCAAATTTTACAATCAAACAATGAAGATGGAAAAATCCTTCTCTCCAACTTCACTGAGCACTTGAAGGGGTTAAAAAGGGGGGAGCAAAACGAAATACCCTACTTTGCAGAATTTCTGGAAGACATAAATACAGAGCGTACAGAGCCAAATGAGAAACAAAATCAAAGAGTACCTTATCATGGTGATCAAACAATGGAAGGAAGACCAAAAGCATCGAAACAATTTCCACCTACAAATCCCATCAGGGTGATAATCCACGGGCACCATCCAGATGAAAGTACAGAAGACGGCAACAGTATGGGAAAACTGATACTTCTGCCTAAGTCAATTGAAGAACTTTTCGGAGTGGCAGGGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTCATGGCTGATGGCTCTAAAATAGAGGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1881 42.96 MSMPSPLPFLIRRHSSDDLKNLTSVSSSLLPAFGTVVNGGYTHLNKFVVVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLLVDAFFALDIVLTFFVAYLDKSTYLLVDDHKKIAVRYLTSLWFPMDVASTLPLQALHRILTGKMYRSDAFGFLNLLRFWRLRRVGELFTRLEKDIRFSYFLTRLAKLICVTLLAVHSAGCFYYWLAVHHKEPGNTWIGVEVEDFENRNIWVGYTYSIYWSIVTLTTVGYGDLHAVNLGEKLFSICYMLFNIGLTSYLIGNMTNLIVHGAVRTYIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFGQTVESAYLFKGISDDLIVQLVSAMKAEYFPPKLDIIIQNEIPTDFYILVSGSVDMISYKNGNEQVLANLESPQMAGEIAVMLNIPQPFTVRTKRLSQVIRISHHHFKQILQSNNEDGKILLSNFTEHLKGLKRGEQNEIPYFAEFLEDINTERTEPNEKQNQRVPYHGDQTMEGRPKASKQFPPTNPIRVIIHGHHPDESTEDGNSMGKLILLPKSIEELFGVAGKRFGKRGSSILMADGSKIEDLNVLREGDHLFFV 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12216357 12223791 - CmoCh01G015920.1 Cmo01g01592 375075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01592 626 SUPERFAMILY Voltage-gated potassium channels 51 299 - -
Cmo01g01592 626 Pfam KHA, dimerisation domain of potassium ion channel 557 625 IPR021789 -
Cmo01g01592 626 SUPERFAMILY cAMP-binding domain-like 305 495 IPR018490 -
Cmo01g01592 626 ProSiteProfiles cAMP/cGMP binding motif profile. 376 495 IPR000595 -
Cmo01g01592 626 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo01g01592 626 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo01g01592 626 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo01g01592 626 PRINTS EAG/ELK/ERG potassium channel family signature 272 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo01g01592 626 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo01g01592 626 Gene3D Jelly Rolls 341 503 IPR014710 -
Cmo01g01592 626 Gene3D - 58 300 - -
Cmo01g01592 626 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 57 625 - -
Cmo01g01592 626 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 5 57 - -
Cmo01g01592 626 PANTHER POTASSIUM CHANNEL AKT1 5 57 IPR045319 GO:0005249|GO:0006813
Cmo01g01592 626 PANTHER POTASSIUM CHANNEL AKT1 57 625 IPR045319 GO:0005249|GO:0006813
Cmo01g01592 626 SMART cnmp_10 376 493 IPR000595 -
Cmo01g01592 626 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Cmo01g01592 626 MobiDBLite consensus disorder prediction 523 551 - -
Cmo01g01592 626 Pfam Ion transport protein 56 302 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo01g01592 626 ProSiteProfiles KHA domain profile. 557 626 IPR021789 -
Cmo01g01592 626 CDD CAP_ED 376 489 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01592 Cmo-Chr1:12216357 Cmo13g00587 Cmo-Chr13:6533380 0 dispersed
Cmo01g01592 Cmo-Chr1:12216357 Cmo09g00495 Cmo-Chr9:2271903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01592 K21867 - csv:101215177 1073.54