Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01596 ATGCCGGGGCTTACCTGCAATGCCTGTAACAAAGAATTTATAGACACCGAGGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGGTACAATCTCAAGCGCAAGGTGGCTAATGTTCCTGGGGTTACAGAGGCATTATTCTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAGAGACCGCAATGTCATACTCTTGTGGCCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCCAAGAGTCACATCATCCGAGCTTCACAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGAGAATTTCTAATAGGGTGCCCCAACAAAATGAGGAAGAGAGTGAGGAGTGGGAAGAAGCTGATTCTGACGAAGACATGATCGATGAGAATGACGATGAGGGTGAAGACAATGATTCTGATGCCATTGAGGTGGACTTGGATCCATCGTGCTGCTTCATGTGTGATTTAGAGCATGATACCATCGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCCGAATGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAACGATAATCGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGACGAGAACGAAGAAGTAGAATTGGAAGAATTTTTTGACTACAGTAGCAGTTACGTGGATGGAAGTGGCAACCAGCTAGTAGCATCAGGGGATGGGGCCAATTCTGTTCAGCTTGGTAGTGGTGGAGCTGAGCTCATCTTAGCTCAAAGAACTACCGATCGGCAATCGACCAAAACGCTTGGTTCCAGGCAATTTATACGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATAACTGCTGCATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCGAGGGAGAGGACGATCAGGATGAAGGTGATGAAAGAAATTAATCGAACTGGATTGGAAGCCATGCGTACCAAAGTCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAATAATGTTACATACTAG 1179 45.04 MPGLTCNACNKEFIDTEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSETAMSYSCGLCSKAYRSAQAHAQHLKSKSHIIRASQGTHDQEVEKPIIKPLPQRISNRVPQQNEEESEEWEEADSDEDMIDENDDEGEDNDSDAIEVDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFIPDVEYLKDPNGFLTYLGLKVMRDFRCLYCNDNRLPFSSLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFFDYSSSYVDGSGNQLVASGDGANSVQLGSGGAELILAQRTTDRQSTKTLGSRQFIRYYRQKPRPSPANDAAITAALAARYKSMGLATVQSRERTIRMKVMKEINRTGLEAMRTKVGLKNNVIRNLPNNVTY 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12242133 12245392 + CmoCh01G015960.1 Cmo01g01596 375079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01596 392 SMART c2h2final6 215 242 IPR013087 -
Cmo01g01596 392 SMART c2h2final6 4 28 IPR013087 -
Cmo01g01596 392 SMART c2h2final6 68 92 IPR013087 -
Cmo01g01596 392 SMART c2h2final6 164 187 IPR013087 -
Cmo01g01596 392 PANTHER ZINC FINGER PROTEIN-RELATED 1 392 - -
Cmo01g01596 392 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Cmo01g01596 392 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Cmo01g01596 392 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Cmo01g01596 392 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cmo01g01596 392 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cmo01g01596 392 MobiDBLite consensus disorder prediction 127 155 - -
Cmo01g01596 392 PANTHER ZINC FINGER PROTEIN 622 1 392 IPR040025 -
Cmo01g01596 392 MobiDBLite consensus disorder prediction 114 155 - -
Cmo01g01596 392 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cmo01g01596 392 Pfam C2H2 type zinc-finger (2 copies) 166 267 IPR041661 -
Cmo01g01596 392 SUPERFAMILY beta-beta-alpha zinc fingers 150 205 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01596 Cmo09g00513 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01596 Cmo-Chr1:12242133 Cmo09g00513 Cmo-Chr9:2386258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9129 PF12756 zf-C2H2_2 2.30E-25 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01596 K14816 - csv:101219700 634.795