Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01597 ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCGTCTCAGACCAATGACTCCTCTTTGTCGAAGAGTCGAGAAACGCCGGGCGTGGTTCCAGTGACGGTAAAACAGATAAGTGAAGCCTCCCATTCTGGCGAAGAGAAGGCCAACTTTGTGATCAACGGCGTCGATATTACAAATGTTACAATCGTCGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACTGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACTTTTGACACTAAGCAAATGGATGAAATACAAGATGGAATGTATGTACGGGTAATTGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGACGAGATTACCTTCCACTTTATTGAATGCATACATGATCACTTGCGGAATTCCAAGTTACAGCCCAATGGAGATGTATCGACACAGTTCCAATCCTCGGATTCATCTGTGAAGCCTGCAGTGCAGAGTGGCTCGAGTGGATATCAGACAGCATCTTCAGGACTATCGGCTGAGCAGCACACTTTGATGTCAAAAAGAACTGTGACGAATTGGTCCTTGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGAATACACAGAGATGAACTGTCCCAACAACTGA 711 43.88 MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQHTLMSKRTVTNWSLTICSCPPALQKKEEYTEMNCPNN 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12247131 12251004 + CmoCh01G015970.1 Cmo01g01597 375080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01597 236 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 205 - -
Cmo01g01597 236 PIRSF RPA32 1 217 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmo01g01597 236 Gene3D - 29 160 IPR012340 -
Cmo01g01597 236 MobiDBLite consensus disorder prediction 1 30 - -
Cmo01g01597 236 Pfam OB-fold nucleic acid binding domain 63 135 IPR004365 GO:0003676
Cmo01g01597 236 SUPERFAMILY Nucleic acid-binding proteins 32 158 IPR012340 -
Cmo01g01597 236 PANTHER REPLICATION PROTEIN A-RELATED 1 205 IPR040260 -
Cmo01g01597 236 CDD RPA2_DBD_D 62 155 - -
Cmo01g01597 236 MobiDBLite consensus disorder prediction 162 192 - -
Cmo01g01597 236 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01597 Cmo09g00511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01597 Cmo-Chr1:12247131 Cmo11g00386 Cmo-Chr11:1928502 1.99E-50 dispersed
Cmo01g01597 Cmo-Chr1:12247131 Cmo09g00511 Cmo-Chr9:2374387 2.28E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01597 K10739 - csv:101220176 342.813