Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01600 ATGGGTGTCGGTGTGTCGTGCCCGAGGGGTCTGGTTTCTGCTATCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTACCATTTCCGCTTCTCCTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCGATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGATGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGATGAGGACATAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAG 606 46.7 MGVGVSCPRGLVSAIGFLSMVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12257406 12261602 + CmoCh01G016000.1 Cmo01g01600 375083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01600 201 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 47 201 IPR003742 GO:0006364|GO:0008168
Cmo01g01600 201 CDD RlmH-like 49 201 IPR003742 GO:0006364|GO:0008168
Cmo01g01600 201 SUPERFAMILY alpha/beta knot 49 199 IPR029028 -
Cmo01g01600 201 Pfam Predicted SPOUT methyltransferase 49 200 IPR003742 GO:0006364|GO:0008168
Cmo01g01600 201 SFLD SPOUT Methyltransferase 27 201 - -
Cmo01g01600 201 Gene3D - 48 201 IPR029026 -
Cmo01g01600 201 PANTHER METHYLTRANSFERASE 29 201 IPR003742 GO:0006364|GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01600 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] - csv:101220649 323.939
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g222 Blo01g01348 . Bda01g00709 . . . . Bma01g02136 . . . . . . . . . . . . . . . . Cla05g01786 Cam05g1905 Cec05g1916 Cco05g1979 Clacu05g1898 Cmu05g1779 Cre05g1907 Cone4ag1846 . . . Lsi04g02180 Csa03g04388 Chy04g00314 . . . . . . . . . . Cmo01g01600 . . . . . . . Bhi09g02331 Tan01g3714 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008498 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01600 Cmo_Chr01 FPKM 26.708956 27.030849 25.525852 24.375637 23.260393 22.090364 24.975693 39.04866 39.973221 37.143574