Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01603 ATGGATGAACACCACCAATCACCGCCGGTAGGTGGAGGAGAAAAATCGGCGAAGCGAGAAGAAGATGAAGAAGTCAGTTCAGAAGCCGAAGCCGAAGTCAAATCTAAATCCAAATCTGCCGCTCCGTGCAAGAACAGTTTCTTTGGCAGACATAGAATCTCAGCGGCCATTAACAGACTCCAAAACGAAATCAATATCATCGAGGAAGAATTGCAACAGCTTGAGAGCGTAGGCGAATCCTCCACCGTCTGCAAGGAACTCGTCTCGAGCGTGGAATCGGTTCCCGATCCTCTGCTTTCAGAAACAATCGGCCCGTCGGACGTCAACTGGGACCAGTGGTTCCGAGGAGCTCACGACAGCCGCAACCACAGACGGTGGATCTGA 384 51.56 MDEHHQSPPVGGGEKSAKREEDEEVSSEAEAEVKSKSKSAAPCKNSFFGRHRISAAINRLQNEINIIEEELQQLESVGESSTVCKELVSSVESVPDPLLSETIGPSDVNWDQWFRGAHDSRNHRRWI 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12271908 12273177 - CmoCh01G016030.1 Cmo01g01603 375086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01603 127 Coils Coil 50 77 - -
Cmo01g01603 127 MobiDBLite consensus disorder prediction 1 37 - -
Cmo01g01603 127 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 2-LIKE 19 127 - -
Cmo01g01603 127 Pfam GGL domain 58 116 IPR015898 GO:0007186
Cmo01g01603 127 MobiDBLite consensus disorder prediction 1 44 - -
Cmo01g01603 127 SMART G_gamma_2 54 126 - -
Cmo01g01603 127 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 1 19 127 IPR045878 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01603 K24772 GG1_2; guanine nucleotide-binding protein subunit gamma 1/2, plant - csv:101221518 138.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01603 Cmo-Chr1:12271908 Cmo17g00193 Cmo-Chr17:1149094 6.88E-22 dispersed
Cmo01g01603 Cmo-Chr1:12271908 Cmo09g00504 Cmo-Chr9:2347893 2.19E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g268 . . . . . . . . . . Cma01g01554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01603 . . . . . . Cpe02g00411 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011472 0 1 1 2 0 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 0 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01603 Cmo_Chr01 FPKM 1.613728 1.799037 3.578347 4.733511 7.201708 6.816858 9.542397 0.0 0.0 0.0