Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01605 ATGCCGCTTGGAGATAGAGCAGGCGATAAGACCGAGTCTCGTTATTGCGGTGTCGAGACTGAATTTGATGACGATGTGCCTCAGCTCTTAATCTCAAATCTATCCTCTGGTGGATTTGATTTCGTCGTTGCACCTCTGATGAATCCATCCTATCGACCAAGCTTGGTGCAAAAAGAGAATGGTTGCTCTGCCGTTCTCCCATTTGCTGGATCAGACTTGATTTTAAGCCCTGCACAGTGGAGCAGCCACGTTGTTGGAAAAATTAGTTCTTGGATTGACTTAGATTCTGAAGATGAGATTTTACGAATTGATTCTGAGACAACTCTAAAGCAAGAGATTGCTTGGGCTTCTCATCTCTCTCTGCAGGCATGCCTTCTTCCAGCACCTAAGGGAACATCATATGCGAATTATGCTAGGTGTGTTCATCAGATTTTGCAGGGCCTTAATAACATGCAGTTGTGGCTCAGGATACCTCTGGTGAAGGTTGATGATGATTCTACGGATGCCAAATCTGAACATTTGGTTGATTCTTGGGATTTGTGGAACTCATTTCGTCTGCTTTGCGAGCACCACAGTCAGTTATCAGTTGCACTCGACATTTTGAGTACGTTGCCGTCACCAAACTCGCTTGGACGATGGTTTGGGGAGTCTGTCAGAGCAGCCCTTATTAGCACTGATTGTTTCTTGACTAATTCACGGGGTTATCCATGTCTGTCGAAGCGGCACCAGAAGTTGATTACTGGATTTTTCAACCATTCCATTCAGGTAGTTTTATCCGGGAAGGCATTGCACAACGTTTCAAGGGGTGGTACAGATTCACCTACTGGTCTCAACAAAAGTCCTTCTGATGGTGTTCAGTCTCATCCCTTGAGGTGCTATTTAGATTATGTTGCTTTTCTTTACCAGAGAATGGACCCACTCCCTGAGCAAGAACGAATTGAGCTTGGATACAGGGACTTCTTACAGGCCCCTCTGCAACCTCTTATGGATAATCTAGAATCTCAAACTTATGAAACTTTTGAGAAAGACGCAGTCAAATACATTCAGTACCAACGTGCAATTGCTAAAGCTTTGAAAGATAGGGTCCCAGATGATAAGGCGTCTTCAGTAACAACAGTATTGATGGTCGTAGGCGCAGGTCGTGGTCCTCTGGTTCGGGCAGCATTGCAGGCAGCAGAAGAAACAGACCGCAAACTGAAAGTCTATGCTGTGGAGAAAAATCCTAATGCAGTTGTAACTCTTAATGTGAGCACTCTACTACTTACTTGCTCTGTTCCTTCACTCGTAGTCACGTGTTTGCTTGCTCTTCTGAACTTCGAACGTCTCGTTCTGTGTTTGGTTAGAATGGAGGGCTGGGAAAAAATTGTTACCATAATTTCCTGCGACATGCGTTCCTGGGAAGCTTCAGAGACGGCTGATATTTTGGTGAGTGAGCTGCTGGGTTCTTTTGGTGACAACGAACTATCTCCTGAATGTCTTGATGGGGCCCAGCGATTCTTAAAAGAAGATGGCATTTCAATACCTTCTTCGTACACGAGTTTCCTCCAACCAATTACTGCCTCCAAGCTATACAATGATGTGAAGGCACATAAAGATGTGGTCCACTTTGAAACTGCCTACGTTGTCAAACTGCACAACGTAGCAAGACTATCTCCTCCTCAGCCTGTCTTTACCTTTACTCACCCGAATAAAATATTGGAGGGAAGCAATGAACGGTATAAGAAGCTGGTATTTGAGATACCGAACGACACTGGTGCAGCCATAATACATGGTTTTGGTGGTTATTTTGATGCAACGTTATACGGTGATGTTCATCTGGGCACTGAACCATCCACAGCCACGCCAAATATGTTCAGTTGGTTCGCAATATTCTTCCCATTAAGGACTCCAATATGCGTGCGGCCGGGTTCTTCCGTACAAGTCCATTTCTGGCGTTGTTGTAATCCTAGCAAGGTCTGGTACGAGTGGTGTGTGACATCTCCCAGCCAGTCCCCGCTACATAACGTCAACGGCCGTTCGTATTGGGTTGGCCTATAA 2037 45.26 MPLGDRAGDKTESRYCGVETEFDDDVPQLLISNLSSGGFDFVVAPLMNPSYRPSLVQKENGCSAVLPFAGSDLILSPAQWSSHVVGKISSWIDLDSEDEILRIDSETTLKQEIAWASHLSLQACLLPAPKGTSYANYARCVHQILQGLNNMQLWLRIPLVKVDDDSTDAKSEHLVDSWDLWNSFRLLCEHHSQLSVALDILSTLPSPNSLGRWFGESVRAALISTDCFLTNSRGYPCLSKRHQKLITGFFNHSIQVVLSGKALHNVSRGGTDSPTGLNKSPSDGVQSHPLRCYLDYVAFLYQRMDPLPEQERIELGYRDFLQAPLQPLMDNLESQTYETFEKDAVKYIQYQRAIAKALKDRVPDDKASSVTTVLMVVGAGRGPLVRAALQAAEETDRKLKVYAVEKNPNAVVTLNVSTLLLTCSVPSLVVTCLLALLNFERLVLCLVRMEGWEKIVTIISCDMRSWEASETADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFLQPITASKLYNDVKAHKDVVHFETAYVVKLHNVARLSPPQPVFTFTHPNKILEGSNERYKKLVFEIPNDTGAAIIHGFGGYFDATLYGDVHLGTEPSTATPNMFSWFAIFFPLRTPICVRPGSSVQVHFWRCCNPSKVWYEWCVTSPSQSPLHNVNGRSYWVGL 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12277943 12284244 - CmoCh01G016050.1 Cmo01g01605 375088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01605 678 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 445 678 IPR025799 GO:0016274|GO:0018216
Cmo01g01605 678 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 415 IPR025799 GO:0016274|GO:0018216
Cmo01g01605 678 Pfam PRMT5 TIM barrel domain 38 302 IPR035247 -
Cmo01g01605 678 Pfam PRMT5 arginine-N-methyltransferase 310 415 IPR035075 -
Cmo01g01605 678 Pfam PRMT5 arginine-N-methyltransferase 447 507 IPR035075 -
Cmo01g01605 678 Gene3D - 14 310 - -
Cmo01g01605 678 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 445 678 - -
Cmo01g01605 678 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 336 677 IPR029063 -
Cmo01g01605 678 PIRSF PRMT5 3 419 IPR007857 GO:0006479|GO:0008168|GO:0035246
Cmo01g01605 678 PIRSF PRMT5 438 678 IPR007857 GO:0006479|GO:0008168|GO:0035246
Cmo01g01605 678 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 415 - -
Cmo01g01605 678 Gene3D - 510 678 - -
Cmo01g01605 678 Pfam PRMT5 oligomerisation domain 510 676 IPR035248 -
Cmo01g01605 678 Gene3D Vaccinia Virus protein VP39 314 509 IPR029063 -
Cmo01g01605 678 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 321 656 IPR025799 GO:0016274|GO:0018216
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01605 K02516 PRMT5, HSL7; type II protein arginine methyltransferase [EC:2.1.1.320] - csv:101221977 1200.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01605 Cmo-Chr1:12277943 Cmo09g00502 Cmo-Chr9:2340510 6.53E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g264 . . . . . . . . . . Cma01g01558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01605 . . . . . . Cpe02g00409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010530 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01605 Cmo_Chr01 FPKM 17.230158 15.206587 14.455807 14.109315 10.019334 7.92389 10.991778 18.095881 20.906553 24.577444