Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01612 ATGGCCAATCCTATCACTCTCCAAGAGATTCGCAACGAGTCCGTCGATCTGGAACATATTCCAATCGGCGAAGTGTTTGAGAAGCTAAAATGCACAAAAGAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTGGAAGAGAAAAAGGAGAGCAAAATCCTGAAATTTCTAGGGTTTATGTGGAACCCTCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTAGCAAACGGCGGCGGAAGGCCTCCGGACTGGCAGGATTGCGTGGGAGTCATTGCCCTACTTTTAATCAACTCAACCATCAGCTTTCTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGTCTTGCTCCCAGAACTAAGGTTCTCAGAGATGGTCGTTGGAGTGAGCAAGATGCTGCAATGCTTGTTCCAGGAGATATAATAAGTATCAAACTGGGAGACATTGTCCCTGCTGATGCTCGTCTTCTTGAAGGGGACCCTTTGAAGATTGATCAATCTGCTTTAACTGGCGAGTCCCTCCCGGTTACCAAAAACCCTTCGGACGAGGTTTTTTCGGGGTCGACCTGTAAACAGGGAGAAATCGAAGCAGTAGTGATTGCCACTGGTGTGCATACCTTCTTTGGAAAAGCTGCTCATTTAGTGGACAGCACCAATCAAGTTGGGCATTTCCAAAAAGTTCTTACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCTATTGGAATTGTTATTGAGATCATAGTCATGTACCCAATTCAACATCGTGCATATAGGGATGGCATTGACAATTTGCTGGTTCTTTTGATTGGAGGAATTCCTATTGCCATGCCCACTGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGTCTTTCTAAGCAAGGTGCAATTACCAAGCGGATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTTTGCAGTGATAAGACTGGAACATTAACCTTGAATAGGCTCACTGTTGACCAATCCTTGACCGAAGTCTTTGTGGGGGATGTGGATAAAGAACATGTCATTCTTCTTGCAGCAAGGGCCTCTAGGACCGAAAATCAGGACGCCATAGATGCTGCTATCGTTGGAATGCTGGCAGATCCAAAAGAGGCACGAGCTGGTATTAGAGAGGTTCATTTTTTTCCATTCAACCCTGTTGATAAGAGAACTGCTCTCACTTTTATTGATTCCAACGATAGCTGGCACCGAGTTAGCAAAGGTGCTCCAGAGCAGATCTTAAATCTTTGCAATTCAAATGAAGCCGTCAGGGAGAAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTCCGATCATTGGGTGTTGCCAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGATCCATGGCAACTTGTTGGGTTGTTAGCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGAAGGGCTCTGAACCTTGGAGTGAATGTCAAGATGATTACTGGGGACCAACTGGCTATTGCTAAGGAAACCGGTCGGAGGCTTGGTATGGGATCAAATATGTACCCTTCTTCTGCATTACTTAGTCAAGACAGGGATGCATCAGCAGACACCCTTCCTGTGGATGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGTGAGAAGGTTACAAGAGAAGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGACGCCCCTGCACTAAAGAAGGCAGATATTGGCATTGCTGTTGCTGATGCAACTGATGCAGCTAGGAGCGCTTCTGACATCGTCCTCACCGAACCAGGATTGAGCGTCATTATCAGTGCAGTACTGACCAGTAGAGCTATTTTCCAGAGGATGAAGAATTATACGATTTATGCAGTTTCCATCACCATCCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAAATTTGATTTCGCTCCATTCATGGTTCTGATTATAGCTATTCTAAACGATGGAACAATCATGACCATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCCGACAGTTGGAAGTTGAAGGAAATTTTTGCTACTGGCATTGTGTTGGGAGGATACTTGGCTCTGATGACAGTGTTATTCTTCTGGATCGTGCGAGACACCGACTTTTGCTCGAACAAGTTTTACGTAGCATCCCTGAGGAAGGACAACCCGAGAATGATGGCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATCTTCGTCACAAGGTCTCGAAGTTGGTCCTTCGTGGAACGTCCCGGACTTCTCTTAGTGAGCGCTTTCATAGTTGCCCAGCTGGTAGCAACACTAATAGCAGTGTATGCAAGCTGGGATTTTGCAAGAATAAAAGGCACCGGGTGGGGATGGGCTGGTGTGATCTGGCTTTATAGTTTGATAACTTACATCCCTCTTGATATCCTCAAATTTACCATTCGCTATATTCTTAGTGGAAGGGCTTGGAACAACCTTTTGCAGAACAAGACTGCTTTCACAACCAAGAAAGATTACGGGAAAGAAGAGAGAGAAGCACAATGGGCAACCACACAAAGAACCATTCATGGTCTTCAACTACCTCAATCCAACAACGCTCTCTCTGATAGGAACAGTTGTGGGGAGCTCTCCGAAATCGCCGAGCAAGCCAGACGACGCGCTGAAATCGCAAGGTTGCGGGAGTTGCACACTCTAAAAGGTCGGGTGGAGTCGGTGGTGAAGTTGAAAGGACTGGACATCGACACAATTAATCAACATTACACTGTCTAA 2859 45.79 MANPITLQEIRNESVDLEHIPIGEVFEKLKCTKEGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRPPDWQDCVGVIALLLINSTISFLEENNAGNAAAALMAGLAPRTKVLRDGRWSEQDAAMLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDQSLTEVFVGDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTFIDSNDSWHRVSKGAPEQILNLCNSNEAVREKVHGVIDKFAECGLRSLGVARQEVPEKTKESPGDPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRDASADTLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIVRDTDFCSNKFYVASLRKDNPRMMAALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFIVAQLVATLIAVYASWDFARIKGTGWGWAGVIWLYSLITYIPLDILKFTIRYILSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQLPQSNNALSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12307894 12313381 + CmoCh01G016120.1 Cmo01g01612 375095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01612 952 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cmo01g01612 952 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Cmo01g01612 952 SFLD p-type atpase 312 640 IPR044492 -
Cmo01g01612 952 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 PANTHER PLASMA MEMBRANE ATPASE 3 932 - -
Cmo01g01612 952 Gene3D - 95 816 - -
Cmo01g01612 952 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cmo01g01612 952 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo01g01612 952 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cmo01g01612 952 PANTHER CALCIUM-TRANSPORTING ATPASE 3 932 - -
Cmo01g01612 952 Gene3D - 327 626 IPR023214 -
Cmo01g01612 952 Gene3D - 342 489 IPR023299 GO:0000166
Cmo01g01612 952 Pfam E1-E2 ATPase 132 310 - -
Cmo01g01612 952 SUPERFAMILY HAD-like 326 636 IPR036412 -
Cmo01g01612 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g01612 952 Gene3D - 902 952 - -
Cmo01g01612 952 Gene3D - 133 217 - -
Cmo01g01612 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 848 IPR023298 -
Cmo01g01612 952 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo01g01612 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cmo01g01612 952 SFLD C1.7: P-type atpase like 312 640 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cmo01g01612 952 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01612 Cmo-Chr1:12307894 Cmo12g00243 Cmo-Chr12:1590880 0 dispersed
Cmo01g01612 Cmo-Chr1:12307894 Cmo12g00899 Cmo-Chr12:8278770 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01612 K01535 - csv:101219224 1644.79