Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01612 | ATGGCCAATCCTATCACTCTCCAAGAGATTCGCAACGAGTCCGTCGATCTGGAACATATTCCAATCGGCGAAGTGTTTGAGAAGCTAAAATGCACAAAAGAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTGGAAGAGAAAAAGGAGAGCAAAATCCTGAAATTTCTAGGGTTTATGTGGAACCCTCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTAGCAAACGGCGGCGGAAGGCCTCCGGACTGGCAGGATTGCGTGGGAGTCATTGCCCTACTTTTAATCAACTCAACCATCAGCTTTCTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGTCTTGCTCCCAGAACTAAGGTTCTCAGAGATGGTCGTTGGAGTGAGCAAGATGCTGCAATGCTTGTTCCAGGAGATATAATAAGTATCAAACTGGGAGACATTGTCCCTGCTGATGCTCGTCTTCTTGAAGGGGACCCTTTGAAGATTGATCAATCTGCTTTAACTGGCGAGTCCCTCCCGGTTACCAAAAACCCTTCGGACGAGGTTTTTTCGGGGTCGACCTGTAAACAGGGAGAAATCGAAGCAGTAGTGATTGCCACTGGTGTGCATACCTTCTTTGGAAAAGCTGCTCATTTAGTGGACAGCACCAATCAAGTTGGGCATTTCCAAAAAGTTCTTACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCTATTGGAATTGTTATTGAGATCATAGTCATGTACCCAATTCAACATCGTGCATATAGGGATGGCATTGACAATTTGCTGGTTCTTTTGATTGGAGGAATTCCTATTGCCATGCCCACTGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGTCTTTCTAAGCAAGGTGCAATTACCAAGCGGATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTTTGCAGTGATAAGACTGGAACATTAACCTTGAATAGGCTCACTGTTGACCAATCCTTGACCGAAGTCTTTGTGGGGGATGTGGATAAAGAACATGTCATTCTTCTTGCAGCAAGGGCCTCTAGGACCGAAAATCAGGACGCCATAGATGCTGCTATCGTTGGAATGCTGGCAGATCCAAAAGAGGCACGAGCTGGTATTAGAGAGGTTCATTTTTTTCCATTCAACCCTGTTGATAAGAGAACTGCTCTCACTTTTATTGATTCCAACGATAGCTGGCACCGAGTTAGCAAAGGTGCTCCAGAGCAGATCTTAAATCTTTGCAATTCAAATGAAGCCGTCAGGGAGAAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTCCGATCATTGGGTGTTGCCAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGATCCATGGCAACTTGTTGGGTTGTTAGCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGAAGGGCTCTGAACCTTGGAGTGAATGTCAAGATGATTACTGGGGACCAACTGGCTATTGCTAAGGAAACCGGTCGGAGGCTTGGTATGGGATCAAATATGTACCCTTCTTCTGCATTACTTAGTCAAGACAGGGATGCATCAGCAGACACCCTTCCTGTGGATGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGTGAGAAGGTTACAAGAGAAGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGACGCCCCTGCACTAAAGAAGGCAGATATTGGCATTGCTGTTGCTGATGCAACTGATGCAGCTAGGAGCGCTTCTGACATCGTCCTCACCGAACCAGGATTGAGCGTCATTATCAGTGCAGTACTGACCAGTAGAGCTATTTTCCAGAGGATGAAGAATTATACGATTTATGCAGTTTCCATCACCATCCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAAATTTGATTTCGCTCCATTCATGGTTCTGATTATAGCTATTCTAAACGATGGAACAATCATGACCATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCCGACAGTTGGAAGTTGAAGGAAATTTTTGCTACTGGCATTGTGTTGGGAGGATACTTGGCTCTGATGACAGTGTTATTCTTCTGGATCGTGCGAGACACCGACTTTTGCTCGAACAAGTTTTACGTAGCATCCCTGAGGAAGGACAACCCGAGAATGATGGCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATCTTCGTCACAAGGTCTCGAAGTTGGTCCTTCGTGGAACGTCCCGGACTTCTCTTAGTGAGCGCTTTCATAGTTGCCCAGCTGGTAGCAACACTAATAGCAGTGTATGCAAGCTGGGATTTTGCAAGAATAAAAGGCACCGGGTGGGGATGGGCTGGTGTGATCTGGCTTTATAGTTTGATAACTTACATCCCTCTTGATATCCTCAAATTTACCATTCGCTATATTCTTAGTGGAAGGGCTTGGAACAACCTTTTGCAGAACAAGACTGCTTTCACAACCAAGAAAGATTACGGGAAAGAAGAGAGAGAAGCACAATGGGCAACCACACAAAGAACCATTCATGGTCTTCAACTACCTCAATCCAACAACGCTCTCTCTGATAGGAACAGTTGTGGGGAGCTCTCCGAAATCGCCGAGCAAGCCAGACGACGCGCTGAAATCGCAAGGTTGCGGGAGTTGCACACTCTAAAAGGTCGGGTGGAGTCGGTGGTGAAGTTGAAAGGACTGGACATCGACACAATTAATCAACATTACACTGTCTAA | 2859 | 45.79 | MANPITLQEIRNESVDLEHIPIGEVFEKLKCTKEGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRPPDWQDCVGVIALLLINSTISFLEENNAGNAAAALMAGLAPRTKVLRDGRWSEQDAAMLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDQSLTEVFVGDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTFIDSNDSWHRVSKGAPEQILNLCNSNEAVREKVHGVIDKFAECGLRSLGVARQEVPEKTKESPGDPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRDASADTLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIVRDTDFCSNKFYVASLRKDNPRMMAALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFIVAQLVATLIAVYASWDFARIKGTGWGWAGVIWLYSLITYIPLDILKFTIRYILSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQLPQSNNALSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV | 952 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12307894 | 12313381 | + | CmoCh01G016120.1 | Cmo01g01612 | 375095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01612 | 952 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - | |
Cmo01g01612 | 952 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 603 | - | - | |
Cmo01g01612 | 952 | SFLD | p-type atpase | 312 | 640 | IPR044492 | - | |
Cmo01g01612 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 446 | 464 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 561 | 577 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 589 | 605 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 620 | 645 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 761 | 782 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | PANTHER | PLASMA MEMBRANE ATPASE | 3 | 932 | - | - | |
Cmo01g01612 | 952 | Gene3D | - | 95 | 816 | - | - | |
Cmo01g01612 | 952 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
Cmo01g01612 | 952 | CDD | P-type_ATPase_H | 35 | 842 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cmo01g01612 | 952 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - | |
Cmo01g01612 | 952 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 932 | - | - | |
Cmo01g01612 | 952 | Gene3D | - | 327 | 626 | IPR023214 | - | |
Cmo01g01612 | 952 | Gene3D | - | 342 | 489 | IPR023299 | GO:0000166 | |
Cmo01g01612 | 952 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
Cmo01g01612 | 952 | SUPERFAMILY | HAD-like | 326 | 636 | IPR036412 | - | |
Cmo01g01612 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 103 | 349 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 564 | 679 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo01g01612 | 952 | Gene3D | - | 902 | 952 | - | - | |
Cmo01g01612 | 952 | Gene3D | - | 133 | 217 | - | - | |
Cmo01g01612 | 952 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 848 | IPR023298 | - | |
Cmo01g01612 | 952 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 35 | 807 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cmo01g01612 | 952 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
Cmo01g01612 | 952 | SFLD | C1.7: P-type atpase like | 312 | 640 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 495 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 516 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 589 | 608 | - | - | |
Cmo01g01612 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 612 | 624 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01612 | Cmo-Chr1:12307894 | Cmo12g00243 | Cmo-Chr12:1590880 | 0 | dispersed | |
Cmo01g01612 | Cmo-Chr1:12307894 | Cmo12g00899 | Cmo-Chr12:8278770 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01612 | K01535 | - | csv:101219224 | 1644.79 |