Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01613 ATGCAAATTCAAGACTTTCATTTTCTCCCCTTTTTTCTTCTTCTTCTTCTCTCAACTGGCTGTTTTGCTAAGCTTCACCATAACTATTACCATAATTCATGCCCAAATGTTGAGTCCATTGTGAGAGCTGCAGTGAAGCAGAAGTTTGAACAGACGTTTGTTACTGCTCCCGCTACTCTCCGCCTCTTTTTTCACGATTGTTTTGTTCGGGGCTGTGATGCTTCTGTGCTGCTTCATTCGAATAACCACACTTCTGAGAAAGACAATGCTGAGAATCTTTCGCTCGCCGGAGACGGGTTCGATACTGTAATTAAAGCTAAGGCTGCTGTCGATAGCGTGCCGGAATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTCTTGCTACTAGAGATGTTGTAGCTTTGACAGGAGGGCCGTCGTATGCGGTGGAGTTGGGAAGGCGAGACGGGCGGATCTCGACACGAAAGAGCGTTCGACACCATCTTCCTTTACCTGATTTTGGATTGGATCAGCTGAATGCCATGTTTGCAAGACATGGTCTATCTCAAACAGACATGATTGCTCTCTCAGGTGCACATACAATTGGGTTCTCACACTGCAAGCACTTCTCCAAAAGGCTATATAGCTTCCACAGCAAAAACCGAATCGACCCGACGTTCAACCCGAGGTACGTCGACGAGCTCAAGAGGGAATGCCCGAGGAACGTGGACCAGAGAATTGCTGTGGACATGGACTCGAGGTCGTCGTTGACGTTCGACAACGTGTACTTCAAGAATTTGCAGATGGGAAAAGGGCTGTTCACCTCAGACCAAGTGTTGTTCACAGATAGAAGATCAAGGGAAACAGTGAACTTATTTGCTTCCAACAATTCAGCCTTTGAAGAGGCTTTTGTGGTTGCAATGAAAAAGCTTGGGAGAGTGGGAGTCAAAACAAGAAACCAAGGGGAGATCAGAATTGACTGTTCTTCACTCAACTAA 981 46.18 MQIQDFHFLPFFLLLLLSTGCFAKLHHNYYHNSCPNVESIVRAAVKQKFEQTFVTAPATLRLFFHDCFVRGCDASVLLHSNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPECKNKVSCADILALATRDVVALTGGPSYAVELGRRDGRISTRKSVRHHLPLPDFGLDQLNAMFARHGLSQTDMIALSGAHTIGFSHCKHFSKRLYSFHSKNRIDPTFNPRYVDELKRECPRNVDQRIAVDMDSRSSLTFDNVYFKNLQMGKGLFTSDQVLFTDRRSRETVNLFASNNSAFEEAFVVAMKKLGRVGVKTRNQGEIRIDCSSLN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12314623 12315998 - CmoCh01G016130.1 Cmo01g01613 375096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01613 326 PANTHER - 5 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601|GO:0042744
Cmo01g01613 326 Gene3D Peroxidase, domain 2 164 305 - -
Cmo01g01613 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cmo01g01613 326 Gene3D - 28 326 - -
Cmo01g01613 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cmo01g01613 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 PANTHER PEROXIDASE 5 326 - -
Cmo01g01613 326 Pfam Peroxidase 41 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo01g01613 326 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01613 Cmo-Chr1:12314623 Cmo20g01019 Cmo-Chr20:6692431 4.42E-148 dispersed
Cmo01g01613 Cmo-Chr1:12314623 Cmo03g00964 Cmo-Chr3:7235220 2.36E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01613 K00430 - csv:101218982 580.867