Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01620 | ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAGATGGCTATACAAGAGGCCGCATCGCAAGGATTGAAGAGTATGGAGCATCTCGTTCGTCTTCTTTCTCACAAGCAACCTTCAAACCATGTCGATTGCTCTGATCTAACTGATGCGACTGTTTCGAAGTTCAAGAAAGTGATTTCGCTTCTCAATCGGACTGGCCACGCCAGGTTCCGGCGAGGTCCGGTATCTAATTCGACCTCTTCCTCGTCGTCTGGTTCAGTTCCTCAAAATCAGGCGATGAACATCACTCCTACTCCGTTTACTTCATCGGCGACGGTTTCTGCACCGTCGTTCACCGCTCCAGTCACCGTCGCTCAGCCACTGACGAAGGTTACTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGATACCTTCAGCGTCTCTTCGAGTTCTTCGTTTATGTCCTCTGCTATTACCGGAGACGGCAGCGTATCCAACGGAAAATTAGGAACCTCGATCTTTCTGGCACCAGCTCCGTCTGCTTCCGGCGGAAAACCGCCACTCTCGGCGCCGCCATACAAGAAGAGGTGCCACGAACACGATTATTCCGAAGATTTGTCCGGGAAATTCTCCGGTTCTACCTCTGCATCCGGCAAGTGCCATTGCTCAAAGAGAAGGAAAAACCGTATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCCAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGAAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGTGGATATTACAAGTGTAGCTCGATGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGAGATCCAAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACACAGAGCTCCTTGCCGGAAAATATGGCCACCGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA | 1041 | 50.05 | MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNITPTPFTSSATVSAPSFTAPVTVAQPLTKVTAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKDTFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPSASGGKPPLSAPPYKKRCHEHDYSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMATGVALVFESS | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12343923 | 12345605 | - | CmoCh01G016200.1 | Cmo01g01620 | 375103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01620 | 346 | SUPERFAMILY | WRKY DNA-binding domain | 266 | 328 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01620 | 346 | SMART | WRKY_cls | 268 | 328 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01620 | 346 | PANTHER | WRKY TRANSCRIPTION FACTOR 17-RELATED | 7 | 345 | - | - | |
Cmo01g01620 | 346 | MobiDBLite | consensus disorder prediction | 72 | 94 | - | - | |
Cmo01g01620 | 346 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 7 | 345 | IPR044810 | GO:0003700 | |
Cmo01g01620 | 346 | Pfam | WRKY DNA -binding domain | 270 | 326 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01620 | 346 | Gene3D | WRKY domain | 247 | 321 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01620 | 346 | ProSiteProfiles | WRKY domain profile. | 263 | 329 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo01g01620 | 346 | MobiDBLite | consensus disorder prediction | 74 | 94 | - | - | |
Cmo01g01620 | 346 | Pfam | Plant zinc cluster domain | 215 | 266 | IPR018872 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01620 | Cmo-Chr1:12343923 | Cmo09g00247 | Cmo-Chr9:1115812 | 1.56E-77 | dispersed | |
Cmo01g01620 | Cmo-Chr1:12343923 | Cmo09g00520 | Cmo-Chr9:2424703 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9130 | PF03106 | WRKY | 5.70E-26 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01620 | - | - | bhj:120087087 | 590.882 |