Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01620 ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAGATGGCTATACAAGAGGCCGCATCGCAAGGATTGAAGAGTATGGAGCATCTCGTTCGTCTTCTTTCTCACAAGCAACCTTCAAACCATGTCGATTGCTCTGATCTAACTGATGCGACTGTTTCGAAGTTCAAGAAAGTGATTTCGCTTCTCAATCGGACTGGCCACGCCAGGTTCCGGCGAGGTCCGGTATCTAATTCGACCTCTTCCTCGTCGTCTGGTTCAGTTCCTCAAAATCAGGCGATGAACATCACTCCTACTCCGTTTACTTCATCGGCGACGGTTTCTGCACCGTCGTTCACCGCTCCAGTCACCGTCGCTCAGCCACTGACGAAGGTTACTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGATACCTTCAGCGTCTCTTCGAGTTCTTCGTTTATGTCCTCTGCTATTACCGGAGACGGCAGCGTATCCAACGGAAAATTAGGAACCTCGATCTTTCTGGCACCAGCTCCGTCTGCTTCCGGCGGAAAACCGCCACTCTCGGCGCCGCCATACAAGAAGAGGTGCCACGAACACGATTATTCCGAAGATTTGTCCGGGAAATTCTCCGGTTCTACCTCTGCATCCGGCAAGTGCCATTGCTCAAAGAGAAGGAAAAACCGTATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCCAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGAAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGTGGATATTACAAGTGTAGCTCGATGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGAGATCCAAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACACAGAGCTCCTTGCCGGAAAATATGGCCACCGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1041 50.05 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNITPTPFTSSATVSAPSFTAPVTVAQPLTKVTAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKDTFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPSASGGKPPLSAPPYKKRCHEHDYSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMATGVALVFESS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12343923 12345605 - CmoCh01G016200.1 Cmo01g01620 375103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01620 346 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g01620 346 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01620 346 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 345 - -
Cmo01g01620 346 MobiDBLite consensus disorder prediction 72 94 - -
Cmo01g01620 346 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 345 IPR044810 GO:0003700
Cmo01g01620 346 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01620 346 Gene3D WRKY domain 247 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g01620 346 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g01620 346 MobiDBLite consensus disorder prediction 74 94 - -
Cmo01g01620 346 Pfam Plant zinc cluster domain 215 266 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01620 Cmo-Chr1:12343923 Cmo09g00247 Cmo-Chr9:1115812 1.56E-77 dispersed
Cmo01g01620 Cmo-Chr1:12343923 Cmo09g00520 Cmo-Chr9:2424703 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9130 PF03106 WRKY 5.70E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01620 - - bhj:120087087 590.882